BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0008.p (556 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I M... 1105 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 393 e-110 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 382 e-107 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 379 e-106 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 379 e-106 >gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I MCP-I serine chemoreceptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/556 (99%), Positives = 556/556 (100%) Query: 1 LNKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTL 60 +NKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTL Sbjct: 1 MNKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTL 60 Query: 61 ESARSGIYGIITLDSSEGWDPNEIDRRLDLLVNNLKTVEPVIRSYQATYLTPEESTLLER 120 ESARSGIYGIITLDSSEGWDPNEIDRRLDLLVNNLKTVEPVIRSYQATYLTPEESTLLER Sbjct: 61 ESARSGIYGIITLDSSEGWDPNEIDRRLDLLVNNLKTVEPVIRSYQATYLTPEESTLLER 120 Query: 121 LLKQRQHYADEGVMPAVESLRKRSFQGADDIYSGAMRKQWDAVHQTLSDLKELQINVGRE 180 LLKQRQHYADEGVMPAVESLRKRSFQGADDIYSGAMRKQWDAVHQTLSDLKELQINVGRE Sbjct: 121 LLKQRQHYADEGVMPAVESLRKRSFQGADDIYSGAMRKQWDAVHQTLSDLKELQINVGRE 180 Query: 181 LYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQAVAGGDLSRQ 240 LYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQAVAGGDLSRQ Sbjct: 181 LYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQAVAGGDLSRQ 240 Query: 241 IEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSARTEQQAG 300 IEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSARTEQQAG Sbjct: 241 IEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSARTEQQAG 300 Query: 301 SLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTR 360 SLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTR Sbjct: 301 SLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTR 360 Query: 361 IVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKDL 420 IVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKDL Sbjct: 361 IVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKDL 420 Query: 421 IDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEIDRAIVLM 480 IDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEIDRAIVLM Sbjct: 421 IDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEIDRAIVLM 480 Query: 481 DSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPVAAQSSSGKS 540 DSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPVAAQSSSGKS Sbjct: 481 DSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPVAAQSSSGKS 540 Query: 541 SEAAERVPASGGLLAP 556 SEAAERVPASGGLLAP Sbjct: 541 SEAAERVPASGGLLAP 556 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/523 (48%), Positives = 344/523 (65%), Gaps = 18/523 (3%) Query: 1 LNKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTL 60 N I +LI++ + + ++ + G+ + L + N+ + + L + I+++L Sbjct: 4 FNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 Query: 61 ESAR-SGIYGIITLDSSEGWDP-NEIDRRLDLLVNNLKTVEPVIRSYQATYLTPEESTLL 118 R S + + +E D I RLD+L +Y+A EE L Sbjct: 64 PRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRA-------AYEAQISEAEEKVLY 116 Query: 119 ERLLKQRQHYADEGVMPAVESLRKRSFQGADD----IYSGAMRKQWDAVHQTLSDLKELQ 174 E+ K Y + + L + S +G ++ ++ G K + ++ + + ++ ++ Sbjct: 117 EKFSKSFATY-----LEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVN 171 Query: 175 INVGRELYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQAVAG 234 + + +Q YR L + + A +++A+ A ++ RA+S+PL +AV +A+ VA Sbjct: 172 DAGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQ 231 Query: 235 GDLSRQIEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSAR 294 GDL+ I S DETG LM +L+ M L QIV VR GT+TIT AS+EI +GNLDLS+R Sbjct: 232 GDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSR 291 Query: 295 TEQQAGSLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSI 354 TE+QAGSLEETASAM +LT+TVKQNADNA QANQLAASAS++A +GG VV QVV TM I Sbjct: 292 TEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGI 351 Query: 355 NQSSTRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAA 414 +SS RI DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR+ASAA Sbjct: 352 TESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 411 Query: 415 REIKDLIDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEID 474 +EIK LIDDSVEKVG GS LV++AG TM EVV +VR+VTD+V EIS+AS EQS GI+EI+ Sbjct: 412 KEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEIN 471 Query: 475 RAIVLMDSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRL 517 RAI MD TQQNAALVE+AAAAAQ+L+DQA +LS +S F+L Sbjct: 472 RAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 382 bits (981), Expect = e-107, Method: Compositional matrix adjust. Identities = 268/544 (49%), Positives = 349/544 (64%), Gaps = 29/544 (5%) Query: 4 FSIKIRLILAISFLTI--MLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTLE 61 + ++I L +FL + M+ A G+ + L N + + L + L +++ + Sbjct: 5 YDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQLAMS 64 Query: 62 SARSG-IYGIITLDSSEGWDPNEIDRRLDLLVNNLKTVEPVIRSYQATYLT----PEEST 116 RS + I+ D+ E E++R + + +NNLKT QA Y+T PEE Sbjct: 65 RLRSFELQHILAKDAKE---YEEVERGMQVQMNNLKTA-------QAEYVTQISEPEEKA 114 Query: 117 LLERLLKQRQHYADEGVMPAVESLRKRSFQGAD----DIYSGAMRKQWDAVHQTLSDLKE 172 + + K + E + + S QG D ++ G K + Q + L Sbjct: 115 IYPEVEKLIATFVSEH-----DKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAA 169 Query: 173 LQINVGRELYEHEQQR-YRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQA 231 + + G ++ + Y Q L ++ + A + +A+L A + R I++PL +AV +AQ Sbjct: 170 VN-DKGADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQR 228 Query: 232 VAGGDLSRQIEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDL 291 VAGGDL+ +IE +DETGQL+ ALK M L IV VR GT+TIT AS EI SGNLDL Sbjct: 229 VAGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDL 288 Query: 292 SARTEQQAGSLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTM 351 S+RTE+QA SLEETASAM +LTSTVKQNADNA QANQLA SASEVA +GG VV QVVDTM Sbjct: 289 SSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTM 348 Query: 352 TSINQSSTRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAA 411 SIN SS +I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR+A Sbjct: 349 GSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 408 Query: 412 SAAREIKDLIDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQ 471 AA+EIK+LI+ SV +V GS LV++AG TM EVV +VR+VTD+VGEISSASQEQS+GI+ Sbjct: 409 GAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIE 468 Query: 472 EIDRAIVLMDSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPV 531 +++ AI MD TQQNAALVE+AAAAAQ+L++QAE L+ + F+L E PPV Sbjct: 469 QVNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKL-EQQPDEPASRPPV 527 Query: 532 AAQS 535 A S Sbjct: 528 RAAS 531 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust. Identities = 254/541 (46%), Positives = 346/541 (63%), Gaps = 27/541 (4%) Query: 1 LNKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTL 60 + +RL +F+ +L + + +++ N + + DR + + + + Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 Query: 61 ESARSGIYGIITLDSSEGWDPNEIDRR---LDLLVNNLKTVEPVIRSYQATYLTPEESTL 117 + G I +D E NE +R L++ V K I + Q T + +++ Sbjct: 65 NEQIKYLRG-IAID-IENRPANE--KRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120 Query: 118 LERLLKQRQHYADEGVMPAVESLRKRSFQGADDIYSGAMRKQWD------AVHQTLSDLK 171 L+ A + +L K + D Y +RK D A+ + +D + Sbjct: 121 LD-----EARIAFDASKADFLALVKAGNSTSADEY--VLRKITDTQNNYLALARAFADSQ 173 Query: 172 ELQINV-GRELYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQ 230 + Q+ G + + ++ A+ A +I+ L + R+I +PLT+AV +A+ Sbjct: 174 DAQLQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYL----MARSIVKPLTEAVRVAE 229 Query: 231 AVAGGDLSRQIEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLD 290 VA GDL+ +IE S+DETGQLMQAL+ M L +IV+ VR+GTE+IT AS EI SGNLD Sbjct: 230 NVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLD 289 Query: 291 LSARTEQQAGSLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDT 350 LSARTEQQAGSLEETASAM ++TSTV+QNADNA QANQ+A SASE+A++GG++V +VV T Sbjct: 290 LSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHT 349 Query: 351 MTSINQSSTRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRA 410 M INQSS +IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQR+ Sbjct: 350 MDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 409 Query: 411 ASAAREIKDLIDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGI 470 A+AA+EIK LI DSV KV GSALV QAG TME+VV++VR VTD+V EIS+AS EQS GI Sbjct: 410 AAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGI 469 Query: 471 QEIDRAIVLMDSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPP 530 +EI+RA+ MD TQQNAALVEQAAAAA+++++QA +L+ ++S F+L A + A P Sbjct: 470 EEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL--EQGAASIPAAP 527 Query: 531 V 531 V Sbjct: 528 V 528 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust. Identities = 221/322 (68%), Positives = 263/322 (81%), Gaps = 1/322 (0%) Query: 197 LLAMGA-GLIVAVLEAWLLVRAISQPLTQAVGIAQAVAGGDLSRQIEVRSQDETGQLMQA 255 LLA+GA +++ AWLL R+I++PL QAV IA+ VA GDL+ +I+ S+DETG+L+ A Sbjct: 190 LLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAA 249 Query: 256 LKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSARTEQQAGSLEETASAMAQLTST 315 LK M L IV VR GTETI AS+EI +GNLDLSARTE QAGSLEETASAM QLTST Sbjct: 250 LKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQLTST 309 Query: 316 VKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTRIVDIIAVIDGIAFQT 375 VKQNADNA QAN+LAASAS+VA +GG VV QVV TM +I+ SS +I DII VIDGIAFQT Sbjct: 310 VKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAFQT 369 Query: 376 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKDLIDDSVEKVGKGSALV 435 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQR+ASAA+EIK LIDDSVEKV GS LV Sbjct: 370 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLV 429 Query: 436 DQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEIDRAIVLMDSSTQQNAALVEQAA 495 +AG TM+EVV +V +VT +V EI+ ASQEQS GI++++ AI +D +TQQNAALVEQAA Sbjct: 430 ARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAA 489 Query: 496 AAAQALEDQAEKLSLAMSAFRL 517 AAA++++DQA L+ A+S FRL Sbjct: 490 AAARSMQDQAASLTDAVSVFRL 511 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,143,027 Number of extensions: 36573 Number of successful extensions: 443 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 274 Number of HSP's successfully gapped: 69 Length of query: 556 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 466 Effective length of database: 1,193,720 Effective search space: 556273520 Effective search space used: 556273520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)