BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0006.p
         (584 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose tra...  1160   0.0  
gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-...    60   6e-10

>gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose
           transferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 584

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/584 (99%), Positives = 579/584 (99%)

Query: 1   MFLIKSPAINKVGPSVSATPASTYGERATFARFGWLLLVLAGLAWLLPGIFGHGPWKQDE 60
           MFLIKSPAINKVGPSVSATPASTYGERATFARFGWLLLVLAGLAWLLPGIFGHGPWKQDE
Sbjct: 1   MFLIKSPAINKVGPSVSATPASTYGERATFARFGWLLLVLAGLAWLLPGIFGHGPWKQDE 60

Query: 61  TYTFGVIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAMLLAKLLYPLLPYHEGARLASVL 120
           TYTFGVIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAMLLAKLLYPLLPYHEGARLASVL
Sbjct: 61  TYTFGVIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAMLLAKLLYPLLPYHEGARLASVL 120

Query: 121 YNLVTLVFVARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDVALVTGGVMA 180
           YNLVTLVFVARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDVALVTGG MA
Sbjct: 121 YNLVTLVFVARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDVALVTGGAMA 180

Query: 181 IYGLLAIALNEERRTPSWSAALWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSL 240
           IYGLLAIALNEERR PSWSAA WFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSL
Sbjct: 181 IYGLLAIALNEERRAPSWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSL 240

Query: 241 SYWKMVGAAVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDHTV 300
           SYWKMVGAAVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDHTV
Sbjct: 241 SYWKMVGAAVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDHTV 300

Query: 301 ILRALIGFALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYLLP 360
           ILRALIGFALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYLLP
Sbjct: 301 ILRALIGFALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYLLP 360

Query: 361 VLLPLALLGARAIARLPNAFHLGWDWFSRIAFGVLATAIWAIYVVSSLPAADHHWIDFMG 420
           VLLPLALLGARAIARLPNAFHLGWDWFSRIAFGVLA AIWAIYVVSSLPAADHHWIDFMG
Sbjct: 361 VLLPLALLGARAIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAADHHWIDFMG 420

Query: 421 QWLPLNFVTPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWFTGITLMWGLAFTLL 480
           QWLPLNFVTPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWF GITLMWGLAFTLL
Sbjct: 421 QWLPLNFVTPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWFAGITLMWGLAFTLL 480

Query: 481 LPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQ 540
           LPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQ
Sbjct: 481 LPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQ 540

Query: 541 TQCRWVLLETPGNTPLPQGQWKLFWEGRRDGDDGQLLKVYRRAD 584
           TQCRWVLLETPGNTPLPQGQWKLFWEGRRDGDDGQLLKVYRRAD
Sbjct: 541 TQCRWVLLETPGNTPLPQGQWKLFWEGRRDGDDGQLLKVYRRAD 584


>gi|300310191|ref|YP_003774283.1|
           undecaprenyl-phosphate-4-amino-L-arabinose--lipid A
           4-amino-L-arabinosyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 574

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)

Query: 459 WRGALSWFTGITLMWGLAFTLLLPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGE 518
           WR  +    G+ L W L  TL LPW +YGKSY  V   ++ ++ +  Q   C+ + N+G 
Sbjct: 448 WRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYAGVAEQIESKLGSVKQ---CVQT-NVGP 503

Query: 519 SEAPMLYYYTGILHQPIDGVYQTQCRWVLLETPGNTP-----LPQ--GQWKLFWEGRRDG 571
           ++     Y+  +      G    +C ++LL+   +       L Q  G W++ WEGRR  
Sbjct: 504 AQRASFAYFGNVRFADEHG---QRCDYLLLQDDISNQDAALMLRQYPGAWRMVWEGRRPS 560

Query: 572 DDGQLLKVYRRAD 584
           D  +  ++YRR+ 
Sbjct: 561 DRDERFRLYRRSK 573


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,886,046
Number of extensions: 81100
Number of successful extensions: 356
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 2
Length of query: 584
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 494
Effective length of database: 1,193,720
Effective search space: 589697680
Effective search space used: 589697680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)