BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0005.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313249|ref|YP_003777341.1| major facilitator superfamily p...   771   0.0  
gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance...    55   1e-08

>gi|300313249|ref|YP_003777341.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/398 (99%), Positives = 397/398 (99%)

Query: 1   MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDNDTLVGIALGIYGLAQAFG 60
           MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDNDTLVGIALGIYGLAQAFG
Sbjct: 1   MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDNDTLVGIALGIYGLAQAFG 60

Query: 61  QIPYGIASDRYGRKRIIVIGLLLFALGSFVAAAATSVNWLLVGRALQGSGAISAAITAFI 120
           QIPYGIASDRYGRKRIIVIGLLLFALGSFVAAAATSV WLLVGRALQGSGAISAAITAFI
Sbjct: 61  QIPYGIASDRYGRKRIIVIGLLLFALGSFVAAAATSVIWLLVGRALQGSGAISAAITAFI 120

Query: 121 ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVVVW 180
           ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVVVW
Sbjct: 121 ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVVVW 180

Query: 181 VVPAAPLVQARRVPLREVLRHGELMRLNFGVFTLHLTQVAMFMVVPGALVQLAGLPLGEH 240
           VVPAAPLVQARRVPLREVLRHGELMRLNFGVFTLHLTQVAMFMVVPGALVQLAGLPLGEH
Sbjct: 181 VVPAAPLVQARRVPLREVLRHGELMRLNFGVFTLHLTQVAMFMVVPGALVQLAGLPLGEH 240

Query: 241 WKIYLPVVLASFVLMLPPVFVAEKYGRMKQVFLGAIGLMLLVQLGFWAVLSHPLGHWWML 300
           WKIYLPVVLASFVLMLPPVFVAEKYGRMKQVFLGAIGLMLLVQLGFWAVLSHPLGHWWML
Sbjct: 241 WKIYLPVVLASFVLMLPPVFVAEKYGRMKQVFLGAIGLMLLVQLGFWAVLSHPLGHWWML 300

Query: 301 VALLFLFFVAFNILEASQPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGWIKQNV 360
           VALLFLFFVAFNILEASQPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGWIKQNV
Sbjct: 301 VALLFLFFVAFNILEASQPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGWIKQNV 360

Query: 361 GISEVFALSAVVTLTWLIIAANMKNLPRRSAPAAGATA 398
           GISEVFALSAVVTLTWLIIAANMKNLPRRSAPAAGATA
Sbjct: 361 GISEVFALSAVVTLTWLIIAANMKNLPRRSAPAAGATA 398


>gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 53  YGLAQAFGQIPYGIASDRYGRKRIIVIGLLLFALGSFVAAAATSVNWLLVGRALQGSG-- 110
           Y +A AFGQ+ +G  +D YGRKRI+ +GL LF+LG  ++ AA ++   +  R LQG G  
Sbjct: 65  YLIAYAFGQLVFGPLADAYGRKRILALGLGLFSLGCVLSLAAPNLETFVAARVLQGFGIA 124

Query: 111 AISAAITAFIADS 123
           A +    A I DS
Sbjct: 125 ATNLLAKAIITDS 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,106,840
Number of extensions: 43980
Number of successful extensions: 347
Number of sequences better than 1.0e-08: 13
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 13
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)