BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0242.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311687|ref|YP_003775779.1| hypothetical protein Hsero_2372...   114   3e-27
gi|300310164|ref|YP_003774256.1| hypothetical protein Hsero_0829...    53   9e-09

>gi|300311687|ref|YP_003775779.1| hypothetical protein Hsero_2372
           [Herbaspirillum seropedicae SmR1]
          Length = 93

 Score =  114 bits (284), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 73/91 (80%)

Query: 28  VPMAGGQYRTTGIAETERDAEAAAVKAADATCAKQGKRPEVSDSKTKYKGVVSEDTNRNI 87
           +PMAGGQYRTTG  E+E DA+AAA+KAADA C KQGKR EV +S+TKYKGVVSE TNRN+
Sbjct: 1   MPMAGGQYRTTGFGESENDAQAAALKAADAACNKQGKRFEVVNSQTKYKGVVSESTNRNL 60

Query: 88  NKAGELAASVGVWLPGLGGDHDYQVALTFTC 118
             AG+LAA  G W+P L GD DY+V L F+C
Sbjct: 61  KAAGDLAAWAGGWVPTLSGDDDYEVTLLFSC 91


>gi|300310164|ref|YP_003774256.1| hypothetical protein Hsero_0829
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 52.8 bits (125), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 2   MKFAAVASLALALI----LTACASTQSANVVPMAGGQYRTTGIAETERDAEAAAVKAADA 57
           M   AV  LA+ ++    L AC +   A+++P+  G YR+   +E E+ A  ++++ A +
Sbjct: 1   MTSPAVIRLAIVVLSLLSLPACTTAPVASLMPLEDGSYRSVAYSENEQQALGSSLQLAQS 60

Query: 58  TCAKQGKRPEVSDSKTKYKGVVSEDTNRNINKAGELAASVGVWLPGLGGDHDYQVALTFT 117
           TC ++     V  + T ++G+           AG  A       P L  + DY+  + F 
Sbjct: 61  TCRERNLNHAVVSADTHFRGLPVRRAEPQETAAGLAAYVASPRFPSLTANDDYEAKVHFK 120

Query: 118 C 118
           C
Sbjct: 121 C 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.125    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 268,951
Number of extensions: 7452
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)