BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0238.p (358 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 729 0.0 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 164 8e-42 gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 149 5e-37 gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 145 4e-36 gi|300313081|ref|YP_003777173.1| transcription regulator protein... 133 3e-32 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/358 (98%), Positives = 355/358 (99%) Query: 1 MHSRQSKELNEDCSSVKHIGVIVSEGVILADLAEIAEVFFVADKMLSSMFSQGNGYHFSL 60 MHSRQSKELNEDCSSVKHIGVIVSEGVILADLAEIAEVFFV DKMLSSMFSQGNGYHFSL Sbjct: 18 MHSRQSKELNEDCSSVKHIGVIVSEGVILADLAEIAEVFFVTDKMLSSMFSQGNGYHFSL 77 Query: 61 LSVRGGMITTSSSVQIGTLSLQHHDIRAFDSIIIADGRGNFADCNDPQLLNWLATAALHA 120 LSVRGGMITTSSSVQIGTLSLQHHDIRAFDSIIIADGRGNFADCNDPQLLNWLATAALHA Sbjct: 78 LSVRGGMITTSSSVQIGTLSLQHHDIRAFDSIIIADGRGNFADCNDPQLLNWLATAALHA 137 Query: 121 PRIAALCTGVLVLAEVGLLDGKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSAD 180 PRIAALCTGVLVLAE GLLD KKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSAD Sbjct: 138 PRIAALCTGVLVLAEAGLLDRKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSAD 197 Query: 181 SGTGAEVALALIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRHRSERIQK 240 SGTGAEVALALIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRHRSERIQK Sbjct: 198 SGTGAEVALALIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRHRSERIQK 257 Query: 241 ALIWLDEHMSSSINMTEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKET 300 ALIWLDEHMSSSINM+EAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKET Sbjct: 258 ALIWLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKET 317 Query: 301 DLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKENAPRPAPIVSVGSPLQVHRS 358 DLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKENAPRPAPIVSVGSPLQVHRS Sbjct: 318 DLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKENAPRPAPIVSVGSPLQVHRS 375 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 164 bits (416), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 152/287 (52%), Gaps = 11/287 (3%) Query: 56 YHFSLLSVRGGMITTSSSVQI-GTLSLQHHDIRAFDSIIIADG--RGNFADCNDPQLLNW 112 Y + SV G ++ T S + + G + L + R D++++A G + + L+ W Sbjct: 51 YALRVASVDGALLRTRSPLSLAGIVPLSSIEGR-LDTVLVAGGHEQAIHQAATEVALVEW 109 Query: 113 LATAALHAPRIAALCTGVLVLAEVGLLDGKKVAAHWALRDRLQREFPDIHVEPGDTLVQD 172 L A RI ++CTG VL GLLDG+ V HWA D LQ+ FP V+P D Sbjct: 110 LNRRGRQARRIGSICTGAFVLGAAGLLDGRYVTTHWAAVDLLQQYFPKAKVDPDAIYRID 169 Query: 173 QNVFTSADSGTGAEVALALIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKR 232 + TSA TG ++ALAL+ DDLG A I + L + F H R +I Sbjct: 170 GPICTSAGVTTGIDLALALVRDDLGQEIASAIARDLVL-----FLHRPGRQQQISATLVA 224 Query: 233 HRS--ERIQKALIWLDEHMSSSINMTEAADHVSMSERNFQREFKRETGETPHCFLTKIRI 290 +S + L+W+ +H +++ A+ +MS RNF R F RE G+ P ++ ++RI Sbjct: 225 QQSAGDLFSALLVWMLDHPQEDMSVNALAERAAMSPRNFARRFLREVGKPPGQYVLELRI 284 Query: 291 EAACLYLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKK 337 + AC +L++T IE+IA R GL + + L R+FR+H G++P +YR + Sbjct: 285 DHACRHLEKTGWSIERIAERSGLKNADTLHRVFRQHLGMTPAQYRAR 331 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 105/337 (31%), Positives = 165/337 (48%), Gaps = 35/337 (10%) Query: 17 KHIGVIVSEGVILADLAEIAEVFFVADKMLSSMFSQGNG-YHFSLLSVRGGMITTSSSVQ 75 + + + G+ L DL+ +V +++ QG Y ++S +GG I TS+ + Sbjct: 8 RRVVFLAYAGMNLLDLSGPMQVLATTNRL------QGREVYRLHVVSAQGGTILTSAGLP 61 Query: 76 IGTLSLQHHD--IRA---FDSIIIADGRGNFADCNDPQLLNWLATAALHAPRIAALCTGV 130 +GT SLQ D ++A ++I G D L+ W+ A A RI ++CTG Sbjct: 62 VGTQSLQEMDRLLQATPDLHTLISPGGSSGDQFPLDAALVAWIRQHAQAAVRICSVCTGA 121 Query: 131 LVLAEVGLLDGKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSADSGTGAEVALA 190 LAE G+LDG +V HW LQR +P + V+ ++ ++TSA G ++ALA Sbjct: 122 FHLAEAGVLDGLRVTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTAGIDLALA 181 Query: 191 LIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRHRSE----------RIQK 240 L+E DLG + A T RQ F RPG + S R + Sbjct: 182 LVEQDLGHASA-----IATARQLVMFIK--------RPGGQSQFSTPLATQSTGAGRFAE 228 Query: 241 ALIWLDEHMSSSINMTEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKET 300 W+ H++ +++ A MS R F R + ETG TP + +R+EAA L+ET Sbjct: 229 LHAWIAAHLADDLHVENLAHRAGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEET 288 Query: 301 DLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKK 337 LP+++IA + G ++L R+F + GVSPG+YR++ Sbjct: 289 RLPLKRIASQAGYGEEQNLRRVFLRQLGVSPGQYRER 325 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 145 bits (367), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 164/325 (50%), Gaps = 16/325 (4%) Query: 18 HIGVIVSEGVILADLAEIAEVFFVADKMLSSMFSQGNGYHFSLLSVRGGMITTSSSVQIG 77 H+G +++EG + LA A VF A+K+ F Y SV GG + +S +++ Sbjct: 3 HVGYLLTEGFQVMGLATQA-VFEYANKVAGHEF-----YRLHNYSVGGGELASSLGMRVT 56 Query: 78 TLSLQHHDIRAFDSIIIADGRGN-FADCNDPQLLNWLATAALHAPRIAALCTGVLVLAEV 136 T + D+ ++ G GN + +L AA A RIA +CTG VLAE Sbjct: 57 TAKAAATA--SIDTWVVC-GVGNPLESPASAEECAFLQRAAKKARRIAGICTGGFVLAEA 113 Query: 137 GLLDGKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSADSGTGAEVALALIEDDL 196 GLL ++ HWA +Q FPDI VE + D ++TSA G ++ALA++ DL Sbjct: 114 GLLARRRATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDL 173 Query: 197 GSSFAHRIEQSLTVRQHHQFKHSL-SRGSEIRPGEKRHRSERIQKALIWLDEHMSSSINM 255 G A + + L + QH S S E+ P +++RIQ AL + ++ ++ + Sbjct: 174 GEEAARSVARKLVMHQHRAGGQSQHSEMLELAP-----KTDRIQDALNYARRNLKRALTV 228 Query: 256 TEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKETDLPIEKIARRCGLVS 315 E A+ ++S R F R F ETG++P + +R+EAA L ++++ P+E +AR G Sbjct: 229 EELAEQANLSARQFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRD 288 Query: 316 GEHLARLFRKHHGVSPGEYRKKENA 340 H+ +F + GV+P R++ A Sbjct: 289 RRHMREVFLRGFGVAPQSMRREGRA 313 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 146/285 (51%), Gaps = 7/285 (2%) Query: 56 YHFSLLSVRGGMITTSSSVQIGTLSLQHHDIRAFDSIIIADGRGNFADCNDPQLLNWLAT 115 Y +L S GGMI +S+ I T + +FD++I+A G P L + Sbjct: 38 YRLTLYSEPGGMIRSSAGALIHTERIGRT---SFDTLIVAGGGAPREGLVSPALRRHVLR 94 Query: 116 AALHAPRIAALCTGVLVLAEVGLLDGKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNV 175 AA + RIA +CTG VLA GLLDGK+ HW + +LQ+ P + V+ +D V Sbjct: 95 AAARSRRIAGICTGAFVLAATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAV 154 Query: 176 FTSADSGTGAEVALALIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRHRS 235 +TSA G ++ALALIEDD G A + + L V +H+ S+ S ++ E S Sbjct: 155 WTSAGISAGIDLALALIEDDHGVELARSVARELVV--YHRRPGGQSQFSALQ--EMDGGS 210 Query: 236 ERIQKALIWLDEHMSSSINMTEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACL 295 ERI++AL + EH+ ++ + A+ +S R F R F ETG+TP + ++R EAA L Sbjct: 211 ERIRRALGFAREHLHQALTVDLLAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAARL 270 Query: 296 YLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKENA 340 ++++ +E IAR G + + R + G P R+ A Sbjct: 271 RIEQSQDTLESIARATGFGDADRMRRACLRLFGQPPQAMRRLARA 315 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,102,394 Number of extensions: 44776 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 9 Length of query: 358 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 272 Effective length of database: 1,212,660 Effective search space: 329843520 Effective search space used: 329843520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)