BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0237.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...   211   2e-56
gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...    83   6e-18
gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...    66   6e-13

>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  211 bits (536), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 113/121 (93%)

Query: 1   MQQQSLLLKARSEQRFASFLLDLSRISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRL 60
           MQQQSLLLKARSEQRFA FLLDLSRISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRL
Sbjct: 152 MQQQSLLLKARSEQRFAFFLLDLSRISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRL 211

Query: 61  ISKFRKARLIDVSVRNVRMLSPCTLEELASGAMSWEQLEQEQMSLPRPRNVDLDKCIFNC 120
           ISKFRKA LIDVSVR VR+LSP TLEELASGA SWEQLEQ++M+LP  RN+DLDK IFNC
Sbjct: 212 ISKFRKAGLIDVSVRKVRVLSPSTLEELASGATSWEQLEQQEMNLPCQRNLDLDKRIFNC 271

Query: 121 G 121
           G
Sbjct: 272 G 272


>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 82.8 bits (203), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 61/86 (70%)

Query: 6   LLLKARSEQRFASFLLDLSRISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRLISKFR 65
           LL   R+EQRFA+FL++LS   +  G +ST F LRM+R D+G +LGLT ES+SRLISKFR
Sbjct: 180 LLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFR 239

Query: 66  KARLIDVSVRNVRMLSPCTLEELASG 91
           K  L+ V  R+V ++    L+ LA+G
Sbjct: 240 KQGLLAVEQRDVEVVDLAALKRLAAG 265


>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 66.2 bits (160), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 58/81 (71%), Gaps = 2/81 (2%)

Query: 12  SEQRFASFLLDLS-RISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRLISKFRKARLI 70
           ++Q+ A+FLL+LS R  SR G +ST F LRM+R +IG +LGL  ES+SRL++ F+K+ +I
Sbjct: 171 AQQKMAAFLLNLSSRYMSR-GYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGVI 229

Query: 71  DVSVRNVRMLSPCTLEELASG 91
           +V+ R+V +    TL  +A G
Sbjct: 230 EVNHRDVELCDLPTLRAVALG 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 294,896
Number of extensions: 9192
Number of successful extensions: 17
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 3
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)