BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0232.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311708|ref|YP_003775800.1| periplasmic or secreted lipopro...   419   e-119
gi|300311714|ref|YP_003775806.1| periplasmic or secreted lipopro...   170   6e-44

>gi|300311708|ref|YP_003775800.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  419 bits (1078), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 213/215 (99%)

Query: 1   MSIASELQQKIIDELEWEPSVDARHINVAVKDGIVTLSGYVPRFADKKNAEQAAKRVANV 60
           MSIASELQQKIIDELEWEPSVDARHINVAVKDGIVTLSGYVPRFADKKNAEQAAKRVANV
Sbjct: 1   MSIASELQQKIIDELEWEPSVDARHINVAVKDGIVTLSGYVPRFADKKNAEQAAKRVANV 60

Query: 61  KAVVDELLVNLDGASKRSDLEIAEVALTALRANANLPRDKVTVTVADGWVTLDGEVEWHY 120
           KAVVDELLVNLDGASKRSDLEIAEVALTALRANANLPRDKVTVTVADGWVTLDGEVEWHY
Sbjct: 61  KAVVDELLVNLDGASKRSDLEIAEVALTALRANANLPRDKVTVTVADGWVTLDGEVEWHY 120

Query: 121 QHDSAENSVRHLLGVKGVLNKIQVKSNVRVTDVKSKIHDALVRNAQIDASKIDVAIDHGV 180
           QHDSAENSVRHLLGVKGVLNKIQVKSNVRVTDVKSKIHDALVRNAQIDASKIDVAIDHGV
Sbjct: 121 QHDSAENSVRHLLGVKGVLNKIQVKSNVRVTDVKSKIHDALVRNAQIDASKIDVAIDHGV 180

Query: 181 ATLSGKVKSWAEKEQAGFAAWSAPGVTVVKNNISV 215
           ATLSGKVKSWAEKE AGFAAWS PGVTVVKNNISV
Sbjct: 181 ATLSGKVKSWAEKEPAGFAAWSDPGVTVVKNNISV 215


>gi|300311714|ref|YP_003775806.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  170 bits (431), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 136/210 (64%)

Query: 6   ELQQKIIDELEWEPSVDARHINVAVKDGIVTLSGYVPRFADKKNAEQAAKRVANVKAVVD 65
           +L+Q+++DEL W+P+VD + I V V +GIVTL+G++  +A+K  A++A +R+  V+ +  
Sbjct: 6   QLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGVRGIAV 65

Query: 66  ELLVNLDGASKRSDLEIAEVALTALRANANLPRDKVTVTVADGWVTLDGEVEWHYQHDSA 125
           EL V L G+S+R D EIA  A  AL  N  LP++ + + V DGW+TL GEVE+ YQ  +A
Sbjct: 66  ELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAYQRLAA 125

Query: 126 ENSVRHLLGVKGVLNKIQVKSNVRVTDVKSKIHDALVRNAQIDASKIDVAIDHGVATLSG 185
           E S+R+L G+ G+ N+++V++     D+K+ I  AL R A +    + V +D+   TLSG
Sbjct: 126 EQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKTVTLSG 185

Query: 186 KVKSWAEKEQAGFAAWSAPGVTVVKNNISV 215
           KV S AE+ +A  AA   PGV  V + I V
Sbjct: 186 KVGSLAERHEACKAALHTPGVEQVIDEIIV 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 601,090
Number of extensions: 20597
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)