BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0231.p
         (67 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311709|ref|YP_003775801.1| hypothetical protein Hsero_2394...   135   7e-34
gi|300311706|ref|YP_003775798.1| hypothetical protein Hsero_2391...    79   1e-16

>gi|300311709|ref|YP_003775801.1| hypothetical protein Hsero_2394
          [Herbaspirillum seropedicae SmR1]
          Length = 67

 Score =  135 bits (339), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MNTIEVIEVLAESDSSWRQAAQNAVHGAAVKIHNLRSLYVSDMEAVVADNKITRYRINAK 60
          MNTIEVIEVLAESDSSWRQAAQNAVHGAAVKIHNLRSLYVSDMEAVVADNKITRYRINAK
Sbjct: 1  MNTIEVIEVLAESDSSWRQAAQNAVHGAAVKIHNLRSLYVSDMEAVVADNKITRYRINAK 60

Query: 61 ISFLVDN 67
          ISFLVDN
Sbjct: 61 ISFLVDN 67


>gi|300311706|ref|YP_003775798.1| hypothetical protein Hsero_2391
          [Herbaspirillum seropedicae SmR1]
          Length = 69

 Score = 78.6 bits (192), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 52/66 (78%)

Query: 1  MNTIEVIEVLAESDSSWRQAAQNAVHGAAVKIHNLRSLYVSDMEAVVADNKITRYRINAK 60
          M+ ++VIEVLAESDSSW  AAQNAV   A  + +++S+YV++M A V  +KI +YRINAK
Sbjct: 1  MDILKVIEVLAESDSSWEDAAQNAVRKVAKSVTHIKSIYVNEMSACVDGDKIVKYRINAK 60

Query: 61 ISFLVD 66
          ISF+V+
Sbjct: 61 ISFVVN 66


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 159,649
Number of extensions: 3974
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 67
Length of database: 1,619,870
Length adjustment: 39
Effective length of query: 28
Effective length of database: 1,435,205
Effective search space: 40185740
Effective search space used: 40185740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)