BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0226.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311714|ref|YP_003775806.1| periplasmic or secreted lipopro...   434   e-123
gi|300311708|ref|YP_003775800.1| periplasmic or secreted lipopro...   169   2e-43

>gi|300311714|ref|YP_003775806.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  434 bits (1115), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MKSDHQLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGV 60
           MKSDHQLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGV
Sbjct: 1   MKSDHQLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGV 60

Query: 61  RGIAVELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAY 120
           RGIAVELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAY
Sbjct: 61  RGIAVELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAY 120

Query: 121 QRLAAEQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKT 180
           QRLAAEQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKT
Sbjct: 121 QRLAAEQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKT 180

Query: 181 VTLSGKVGSLAERHEACKAALHTPGVEQVIDEIIVG 216
           VTLSGKVGSLAERHEACKAALHTPGVEQVIDEIIVG
Sbjct: 181 VTLSGKVGSLAERHEACKAALHTPGVEQVIDEIIVG 216


>gi|300311708|ref|YP_003775800.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  169 bits (427), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 135/210 (64%)

Query: 6   QLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGVRGIAV 65
           +L+Q+++DEL W+P+VD + I V V +GIVTL+G++  +A+K  A++A +R+  V+ +  
Sbjct: 6   ELQQKIIDELEWEPSVDARHINVAVKDGIVTLSGYVPRFADKKNAEQAAKRVANVKAVVD 65

Query: 66  ELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAYQRLAA 125
           EL V L G+S+R D EIA  A  AL  N  LP++ + + V DGW+TL GEVE+ YQ  +A
Sbjct: 66  ELLVNLDGASKRSDLEIAEVALTALRANANLPRDKVTVTVADGWVTLDGEVEWHYQHDSA 125

Query: 126 EQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKTVTLSG 185
           E S+R+L G+ G+ N+++V++     D+K+ I  AL R A +    + V +D+   TLSG
Sbjct: 126 ENSVRHLLGVKGVLNKIQVKSNVRVTDVKSKIHDALVRNAQIDASKIDVAIDHGVATLSG 185

Query: 186 KVGSLAERHEACKAALHTPGVEQVIDEIIV 215
           KV S AE+  A  AA   PGV  V + I V
Sbjct: 186 KVKSWAEKEPAGFAAWSDPGVTVVKNNISV 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 648,297
Number of extensions: 24652
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)