BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0225.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311715|ref|YP_003775807.1| universal stress protein [Herba...   225   5e-61
gi|300313176|ref|YP_003777268.1| universal stress protein [Herba...    89   5e-20
gi|300311605|ref|YP_003775697.1| universal stress protein [Herba...    86   1e-18

>gi|300311715|ref|YP_003775807.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  225 bits (574), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 108/109 (99%), Positives = 109/109 (100%)

Query: 1   LSVAEDIVQWAVIDGTAINYLQVENDILENAKSNVARLAALAKSADVPCETFTVKAVHPY 60
           LSVAEDIVQWAVIDGTAINYLQVEN+ILENAKSNVARLAALAKSADVPCETFTVKAVHPY
Sbjct: 49  LSVAEDIVQWAVIDGTAINYLQVENEILENAKSNVARLAALAKSADVPCETFTVKAVHPY 108

Query: 61  EEILAHASHQHCDAIFMASHGRKGLERFILGSQTQKVLANATIPVLVFR 109
           EEILAHASHQHCDAIFMASHGRKGLERFILGSQTQKVLANATIPVLVFR
Sbjct: 109 EEILAHASHQHCDAIFMASHGRKGLERFILGSQTQKVLANATIPVLVFR 157


>gi|300313176|ref|YP_003777268.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score = 89.4 bits (220), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 61/93 (65%)

Query: 17  AINYLQVENDILENAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIF 76
           AI+    E ++   A+ ++ ++   A +A VPC+T  V + +P EEI+  A    CDAIF
Sbjct: 53  AIDPALYEENVKTLAQQHIKKITDAATAAGVPCQTEIVMSFNPDEEIIKAAQLHACDAIF 112

Query: 77  MASHGRKGLERFILGSQTQKVLANATIPVLVFR 109
           MASHGR GL R  LGS+TQKVL ++TIPVLV R
Sbjct: 113 MASHGRSGLSRIFLGSKTQKVLTHSTIPVLVLR 145


>gi|300311605|ref|YP_003775697.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score = 85.5 bits (210), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 51/80 (63%)

Query: 30  NAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIFMASHGRKGLERFI 89
            A ++V  +  +A+   VPC     +   PYEEI+  A  +HCDAIFMAS  R  L R +
Sbjct: 66  RALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKARSTLGRLL 125

Query: 90  LGSQTQKVLANATIPVLVFR 109
           +GSQTQK+LA + +PVLVFR
Sbjct: 126 MGSQTQKLLARSKVPVLVFR 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 302,040
Number of extensions: 9464
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)