BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0213.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311730|ref|YP_003775822.1| LuxR family transcription regul...   513   e-147

>gi|300311730|ref|YP_003775822.1| LuxR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  513 bits (1322), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/249 (99%), Positives = 248/249 (99%)

Query: 1   VYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTV 60
           VYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDD NHRFGNTV
Sbjct: 4   VYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDDNHRFGNTV 63

Query: 61  SVNMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLC 120
           SVNMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLC
Sbjct: 64  SVNMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLC 123

Query: 121 FGVNMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAAS 180
           FGVNMFAYDGDRNIGD+RIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAAS
Sbjct: 124 FGVNMFAYDGDRNIGDIRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAAS 183

Query: 181 PDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRT 240
           PDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRT
Sbjct: 184 PDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRT 243

Query: 241 QLVKRLIDG 249
           QLVKRLIDG
Sbjct: 244 QLVKRLIDG 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 660,197
Number of extensions: 23194
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)