BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0187.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311735|ref|YP_003775827.1| hypothetical protein Hsero_2420...   369   e-104

>gi|300311735|ref|YP_003775827.1| hypothetical protein Hsero_2420
           [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  369 bits (948), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/194 (98%), Positives = 193/194 (99%)

Query: 1   MKLFLDVTRITMIYLHIIAMIAAAVSIVMVDFLAFNRQGSPALARMIDRLATIVLLSLLA 60
           MKLFLDVTRITMIYLHIIAMIAAAVSIVMVDFLAFNRQGSPALARMIDRLAT+VLLSLLA
Sbjct: 1   MKLFLDVTRITMIYLHIIAMIAAAVSIVMVDFLAFNRQGSPALARMIDRLATVVLLSLLA 60

Query: 61  LWTTGLTVIGIDTGFDPHLIAQNGKLLAKLLVVTILSINGVGVHLYVLPRLADGGQRTAL 120
           LW TGLTVIGIDTGFDPHLIAQNGKLLAKLLVVTILSINGVGVHLYVLPRLADGGQRTAL
Sbjct: 61  LWATGLTVIGIDTGFDPHLIAQNGKLLAKLLVVTILSINGVGVHLYVLPRLADGGQRTAL 120

Query: 121 LGSLTLSIGVVSAVSWGYAAFLGIAKALSPHLGFGGFIALYALAIALSWMVAVLIVRPRL 180
           LGSLTLSIGVVSAVSWGYAAFLGIAKALSPHLGFGGFIALYALAIAL+WMVAVLIVRPRL
Sbjct: 121 LGSLTLSIGVVSAVSWGYAAFLGIAKALSPHLGFGGFIALYALAIALAWMVAVLIVRPRL 180

Query: 181 LRPRGLQKAQAAIL 194
           LRPRGLQKAQAAIL
Sbjct: 181 LRPRGLQKAQAAIL 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 485,523
Number of extensions: 19105
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)