BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0184.p (293 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311738|ref|YP_003775830.1| RpiR family transcription regul... 576 e-166 gi|300312817|ref|YP_003776909.1| transcription regulator protein... 103 2e-23 gi|300312806|ref|YP_003776898.1| transcription regulator protein... 89 5e-19 gi|300311166|ref|YP_003775258.1| transcription regulator protein... 79 6e-16 >gi|300311738|ref|YP_003775830.1| RpiR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 576 bits (1485), Expect = e-166, Method: Compositional matrix adjust. Identities = 281/281 (100%), Positives = 281/281 (100%) Query: 13 MLQVAAQYHSLSRQLKVIATYVEQHKTSLMLERISDIAEQCQVQPSAIVRFAKHFGFSGF 72 MLQVAAQYHSLSRQLKVIATYVEQHKTSLMLERISDIAEQCQVQPSAIVRFAKHFGFSGF Sbjct: 1 MLQVAAQYHSLSRQLKVIATYVEQHKTSLMLERISDIAEQCQVQPSAIVRFAKHFGFSGF 60 Query: 73 SEMQAVFREAYTAQAIPSRNYQRRIRNLIQSKPTRVTSGALAHEFIQSSRAGLDELLAGF 132 SEMQAVFREAYTAQAIPSRNYQRRIRNLIQSKPTRVTSGALAHEFIQSSRAGLDELLAGF Sbjct: 61 SEMQAVFREAYTAQAIPSRNYQRRIRNLIQSKPTRVTSGALAHEFIQSSRAGLDELLAGF 120 Query: 133 DEEQFEAAVKLLLKAENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFREEVRS 192 DEEQFEAAVKLLLKAENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFREEVRS Sbjct: 121 DEEQFEAAVKLLLKAENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFREEVRS 180 Query: 193 IDKHDVLIAISFTPYGQETQACVRLAHHRQARTLVITDSQLSPLARHASVLLKVKESSAF 252 IDKHDVLIAISFTPYGQETQACVRLAHHRQARTLVITDSQLSPLARHASVLLKVKESSAF Sbjct: 181 IDKHDVLIAISFTPYGQETQACVRLAHHRQARTLVITDSQLSPLARHASVLLKVKESSAF 240 Query: 253 SFRSLTNAMCLSQALFIALAYRMELDVEEADPIDGYDDASD 293 SFRSLTNAMCLSQALFIALAYRMELDVEEADPIDGYDDASD Sbjct: 241 SFRSLTNAMCLSQALFIALAYRMELDVEEADPIDGYDDASD 281 >gi|300312817|ref|YP_003776909.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 132/261 (50%), Gaps = 10/261 (3%) Query: 8 TVDELMLQVAAQYHSLSRQLKVIATYVEQHKTSLMLERISDIAEQCQVQPSAIVRFAKHF 67 + EL + ++ + Q + A ++ + + + + ++++ QVQPS VR A+H Sbjct: 10 SFSELEALIRERFIDMRPQFQAGAAFLLDNPGEVAVSTMRALSQKAQVQPSTFVRLAQHL 69 Query: 68 GFSGFSEMQAVFREAYTAQAIPSRNYQRRIRNLIQSKPTRVTSGALAHEFIQSSRAGLDE 127 GF+G++E++A+F E + + Y + +++++ R S L E + RA LD Sbjct: 70 GFAGWAELRALFVERLAGE---PKAYAFKAKSIVR----RSNSDKLVAELFTAQRANLDA 122 Query: 128 LLAGFDEEQFEAAVKLLLKAENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFR 187 + AA + LLKA ++++ G R +F I+ L Y + V L+ G+ G Sbjct: 123 SEPKSADRMLGAA-RALLKAHHVHIAGFRAAFSISFLLHYLYRLFRTSVSLVRGSEGSIE 181 Query: 188 EEVRSIDKHDVLIAISFTPYGQETQACVRLAHHRQARTLVITDSQLSPLARHAS-VLLKV 246 E+R+I HD +I +SF PY E A A+ + +TDS ++P+A A +L Sbjct: 182 LELRAIAAHDAVIVVSFAPYSTEAVRVAEAAKQAGAKLIALTDSAVAPIALKADHCILFS 241 Query: 247 KESSAFSFRSLTNAMCLSQAL 267 ES +F F S+ A ++++L Sbjct: 242 HESPSF-FPSMAAATAIAESL 261 >gi|300312806|ref|YP_003776898.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 6/242 (2%) Query: 29 VIATYVEQHKTSLMLERISDIAEQCQVQPSAIVRFAKHFGFSGFSEMQAVFREAYTAQAI 88 V+A VE+ + + + I+D+A V S + R A G+SGF + Q VFR+ A Sbjct: 52 VLAKLVERPE-EVAVRSITDLAASLGVNASTLTRLATRLGYSGFVDFQNVFRDGL---AS 107 Query: 89 PSRN-YQRRIRNLIQSKPTRVTSGALA-HEFIQSSRAGLDELLAGFDEEQFEAAVKLLLK 146 RN Y ++ + LI P R LA + S ++ LA + AVKLL + Sbjct: 108 SHRNFYSQQAQRLITDGPGRHEGDVLAVAQLAAESARNMESCLAQLSAVELRGAVKLLAR 167 Query: 147 AENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFREEVRSIDKHDVLIAISFTP 206 A ++ + GVR+ +A+ L Y L V L+ G E + + + DVL+ S +P Sbjct: 168 ARHVRIYGVRQMHSLASFLCYGLGMIRSEVSLLDAPGQGIAEGLAQLQRGDVLVVASVSP 227 Query: 207 YGQETQACVRLAHHRQARTLVITDSQLSPLARHASVLLKVKESSAFSFRSLTNAMCLSQA 266 Y + + A + + +TD++ SPL A V S+F S+ + S+ Sbjct: 228 YTRIVAEVAQAASNAGLNVIALTDNRASPLVSSAKYAFFVPHESSFFSNSIGAYVVFSEG 287 Query: 267 LF 268 L Sbjct: 288 LM 289 >gi|300311166|ref|YP_003775258.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 78.6 bits (192), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 9/265 (3%) Query: 20 YHSLSRQLKVIATYVEQHKTSLMLERISDIAEQCQVQPSAIVRFAKHFGFSGFSEMQAVF 79 Y LS+ + A YV + I +++E + + RFA GF G++ +A Sbjct: 24 YAQLSKSHRKTADYVLGNPFRAATMTIDELSEAAGISVATANRFAHALGFDGYASFRAAL 83 Query: 80 REAYTAQAIPSRNYQRRIRNLIQSKPTRVTSGALAHEFIQSSRAGLDELLAGFDEEQFEA 139 + P ++RN +Q TS + S A ++ EA Sbjct: 84 VSDFATTLAPVE----KLRNEVQRA---ATSAEIMAAAFDSDIANIEATRRMLTASDCEA 136 Query: 140 AVKLLLKAENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFR--EEVRSIDKHD 197 AV ++L AE I++ G S +A +A+AL+ + V ++ AGG + + +D D Sbjct: 137 AVDMILAAERIFITGFGASAYLAGLMAHALEPYVRTVSSVALAGGPSQAGRQFFKLDNRD 196 Query: 198 VLIAISFTPYGQETQACVRLAHHRQARTLVITDSQLSPLARHASVLLKVKESSAFSFRSL 257 ++I + F Y +T + A + AR L ITDS SPL A V + + S S Sbjct: 197 LVIPMVFPRYAADTVWLTQRAVEKGARILAITDSPGSPLVPLADVTIYAQTDRKLSPTSD 256 Query: 258 TNAMCLSQALFIALAYRMELDVEEA 282 A+ L QAL A+A+R V+ A Sbjct: 257 AAALILIQALCDAVAHRARRSVQAA 281 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 823,835 Number of extensions: 29589 Number of successful extensions: 74 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 4 Length of query: 293 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 209 Effective length of database: 1,222,130 Effective search space: 255425170 Effective search space used: 255425170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)