BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0178.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311744|ref|YP_003775836.1| sugar phosphate isomerase/epime...   624   e-180

>gi|300311744|ref|YP_003775836.1| sugar phosphate
           isomerase/epimerase [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  624 bits (1608), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 304/306 (99%), Positives = 305/306 (99%)

Query: 10  VATPFNVKIGINPISWMNDDLPSLGGETPLEQALSEGAEIGYRGFELGNKFPRQPEALRA 69
           +ATPFNVKIGINPISWMNDDLPSLGGETPLEQALSEGAEIGYRGFELGNKFPRQPEALRA
Sbjct: 1   MATPFNVKIGINPISWMNDDLPSLGGETPLEQALSEGAEIGYRGFELGNKFPRQPEALRA 60

Query: 70  VLGKYQLECVSGWYSGQLATRSVEEEIVAVEAHLNLLAANGAQVMVYGEVADSIQGAPTP 129
           VLGKYQLECVSGWYSGQLATRSVEEEIVAVEAHLNLLAANGAQVMVYGEVADSIQGAPTP
Sbjct: 61  VLGKYQLECVSGWYSGQLATRSVEEEIVAVEAHLNLLAANGAQVMVYGEVADSIQGAPTP 120

Query: 130 LYQRPRFGSEAAWQGYAQRLDQFARHLLQRGVRLAYHHHMGAYVETPEDLDKLMALTGEE 189
           LYQRPRFGSEAAWQGYAQRLDQFARHLLQRGVRLAYHHHMGAYVETPEDLDKLMALTGEE
Sbjct: 121 LYQRPRFGSEAAWQGYAQRLDQFARHLLQRGVRLAYHHHMGAYVETPEDLDKLMALTGEE 180

Query: 190 VGLLFDSGHIAFAGGDPLAVLQRHLDRVCHVHCKDVRPAVVKLARNRDWSFLQAVINGAF 249
           VGLLFDSGHIAFAGGDPLAVLQRHLDRVCHVHCKDVRPAVVKLARNRDWSFLQAVINGAF
Sbjct: 181 VGLLFDSGHIAFAGGDPLAVLQRHLDRVCHVHCKDVRPAVVKLARNRDWSFLQAVINGAF 240

Query: 250 TVPGDGAIDFAPLLQLLYRRGYSGWLVVEAEQDPAVAPSYRYAQMGYRHLSALVAAIENG 309
           TVPGDGAIDFAPLLQLLYRRGYSGWLVVEAEQDPAVAPSYRYAQMGYRHLS LVAAIENG
Sbjct: 241 TVPGDGAIDFAPLLQLLYRRGYSGWLVVEAEQDPAVAPSYRYAQMGYRHLSTLVAAIENG 300

Query: 310 SLQEAA 315
           SLQEAA
Sbjct: 301 SLQEAA 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,118,495
Number of extensions: 50775
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)