BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0168.p (544 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis tra... 1050 0.0 gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 358 e-100 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 194 2e-50 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 177 2e-45 gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sen... 176 5e-45 >gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 559 Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/544 (99%), Positives = 542/544 (99%) Query: 1 LVALVAVLVVMWGTATVYAERARQALAQAQETRFTALALAAEFRQGVDDLAQLARSYVVS 60 LVALVAVLVVMWGTATVYAERARQALAQAQETRFTALALAAEFRQGVDDLAQLARSYVVS Sbjct: 16 LVALVAVLVVMWGTATVYAERARQALAQAQETRFTALALAAEFRQGVDDLAQLARSYVVS 75 Query: 61 GEPRLLEQHQAVLDIRDGQRARPQQYGRVYWDLVGADGQPPRPDSTVAVSLRKLMEQAGY 120 GEPRLLEQHQAVLDIRDGQRARPQQYGRVYWDLVGADGQPPRPDSTVAVSLRKLMEQAGY Sbjct: 76 GEPRLLEQHQAVLDIRDGQRARPQQYGRVYWDLVGADGQPPRPDSTVAVSLRKLMEQAGY 135 Query: 121 SPAELARLDEAWLMSDALASTERRAMQEMQGDAGARGPAQQMLHGDGYQLHRTSILQAFD 180 SPAELARLDEAWLMSDALASTERRAMQEMQGDAGARGPAQQMLHGDGYQLHRTSILQAFD Sbjct: 136 SPAELARLDEAWLMSDALASTERRAMQEMQGDAGARGPAQQMLHGDGYQLHRTSILQAFD 195 Query: 181 DMVGLLEQRTAREVALAQLLAQRLAWLSTLLAVAVVVILALSLRLLYRGSAGPLAQAASM 240 DMVGLLEQRTAREVALAQLLAQRLAWLSTLLAVAVVVILA+SLRLLYRGSAGPLAQA SM Sbjct: 196 DMVGLLEQRTAREVALAQLLAQRLAWLSTLLAVAVVVILAVSLRLLYRGSAGPLAQATSM 255 Query: 241 LAQLARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAAAIQNAAGDIAAGT 300 LAQLARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAAAIQNAAGD+AAGT Sbjct: 256 LAQLARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAAAIQNAAGDMAAGT 315 Query: 301 EHVVARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACEVVRRSAAEVEQVA 360 EHVVARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACEVVRRSAAEVEQVA Sbjct: 316 EHVVARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACEVVRRSAAEVEQVA 375 Query: 361 SAMAAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRTLSSVAQDVSALAQ 420 SAMAAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRTLSSVAQDVSALAQ Sbjct: 376 SAMAAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRTLSSVAQDVSALAQ 435 Query: 421 RTASAAAEVKSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQLIGQIAEVNLEQTS 480 RTASAAAE KSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQLIGQIAEVNLEQTS Sbjct: 436 RTASAAAEFKSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQLIGQIAEVNLEQTS 495 Query: 481 GIDQVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEFRLEAGYEDGCMVI 540 GIDQVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEFRLEAGYEDGCMVI Sbjct: 496 GIDQVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEFRLEAGYEDGCMVI 555 Query: 541 DMPA 544 DMPA Sbjct: 556 DMPA 559 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/553 (38%), Positives = 332/553 (60%), Gaps = 16/553 (2%) Query: 1 LVALVAVLVVMWGTATVYAERARQALAQAQETRFTALALAAEFRQGVDDLAQLARSYVVS 60 L A++ VL+ + A + +R L A E+R+ + LA E RQ DDL +LAR+YVV+ Sbjct: 18 LTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATELRQSSDDLTRLARTYVVT 77 Query: 61 GEPRLLEQHQAVLDIRDGQRARPQQYGRVYWDLVGADGQPPRPDSTVAVSLRKLMEQAGY 120 G+P +Q++A+LDIR+G++ARP+ YGR+YWD V ADG+ PRPDS V+L LM AG+ Sbjct: 78 GDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRPDSNQHVALTDLMRAAGF 137 Query: 121 SPAELARLDEAWLMSDALASTERRAMQEMQG-DAGARGP-----------AQQMLHGDGY 168 + AE+ +L+EA SDAL TE AM ++G A A+G A++++H Y Sbjct: 138 TAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKRADPDLAQARELMHNHAY 197 Query: 169 QLHRTSILQAFDDMVGLLEQRTAREVALAQLLAQRLAWL-STLLAVAVVVILALSLRLLY 227 +++ I++ D+ LL+ RT +V A+ A +A L +L+A+A+VV LA +L L+Y Sbjct: 198 HVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSLIAIALVV-LACTLMLVY 256 Query: 228 RGSAGPLAQAASMLAQLARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAA 287 PLA AAS+ ++A GDL+ +G+ LL+AL ++ + +V V GA Sbjct: 257 HAIRNPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIMQSGLQTIVLDVRNGAQ 316 Query: 288 AIQNAAGDIAAGTEHVVARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACE 347 I +A +IA+GT + +RTE+QA +L + A+SM++L TV+Q+ + AS LA A Sbjct: 317 YINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQNAGNARLASELANTASG 376 Query: 348 VVRRSAAEVEQVASAMAAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRT 407 V R V +V M AI SS RI D+ +ID IA Q+ +L +A++ +G GR Sbjct: 377 VAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRG 436 Query: 408 LSSVAQDVSALAQRTASAAAEVKSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQL 467 + VA +V +LAQR+A+AA E+K+L + ++ +++ GS +A MRE V SV+RV+++ Sbjct: 437 FAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEI 496 Query: 468 IGQIAEVNLEQTSGIDQVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEF 527 I I+ + EQ SGI+Q+ Q + Q+ +TQQN L++Q ++A+ ++ Q +LT F Sbjct: 497 ITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQAHKLTDLVGAF 556 Query: 528 RLEAGYEDGCMVI 540 + G MV+ Sbjct: 557 KTPTAM--GMMVV 567 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/300 (39%), Positives = 191/300 (63%) Query: 233 PLAQAASMLAQLARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAAAIQNA 292 PLA A + ++A GDL+ VR+R + ALL AL+ + +++VR+V GV G I A Sbjct: 220 PLALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATA 279 Query: 293 AGDIAAGTEHVVARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACEVVRRS 352 + +IA G + +RTE+QA +L + A+SM++L TVQQ+TA+ +A+R+A+ A ++ Sbjct: 280 SSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSG 339 Query: 353 AAEVEQVASAMAAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRTLSSVA 412 V +V M I SS +I D+ +ID IA Q+ +L +A++ +G GR + VA Sbjct: 340 GGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 399 Query: 413 QDVSALAQRTASAAAEVKSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQLIGQIA 472 +V +LAQR+A+AA E+K+L ++ ++++GS +A MRE V SV+RV+ +I +I+ Sbjct: 400 SEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEIS 459 Query: 473 EVNLEQTSGIDQVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEFRLEAG 532 EQ SGI+QV Q + Q+ +TQQN L++Q +A+++L EQ ++L QA + FRLEAG Sbjct: 460 AAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAG 519 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/325 (37%), Positives = 194/325 (59%), Gaps = 2/325 (0%) Query: 208 STLLAV-AVVVILALSLR-LLYRGSAGPLAQAASMLAQLARGDLSDSAPVRARGQVAALL 265 S LLA+ A+ ++L +L LL R PL QA ++ +A GDL+ +R + LL Sbjct: 188 SMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLL 247 Query: 266 DALQRLRKAIVRLVKGVHAGAAAIQNAAGDIAAGTEHVVARTEEQAQALLQAAASMQQLA 325 AL+ + ++ +V V G I A+ +IA G + ARTE QA +L + A++M+QL Sbjct: 248 AALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQLT 307 Query: 326 GTVQQHTAHTHQASRLARRACEVVRRSAAEVEQVASAMAAIKASSARITDLGGLIDSIAV 385 TV+Q+ + QA+ LA A +V + A V+QV + M AI ASS +I D+ G+ID IA Sbjct: 308 STVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAF 367 Query: 386 QSKLLGASASLAGCGSGVGGRTLSSVAQDVSALAQRTASAAAEVKSLTETALQQIQNGSR 445 Q+ +L +A++ +G GR + VA +V +LAQR+ASAA E+K L + +++++ +GSR Sbjct: 368 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSR 427 Query: 446 KAVQAEGAMREAVYSVERVSQLIGQIAEVNLEQTSGIDQVVQVLRQVQLLTQQNGLLLQQ 505 +A M+E V SV RV+ ++ +I + EQ+ GI+QV + + TQQN L++Q Sbjct: 428 LVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQ 487 Query: 506 TTSAARALNEQTEQLTQAAAEFRLE 530 +AAR++ +Q LT A + FRLE Sbjct: 488 AAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 176 bits (446), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 177/297 (59%) Query: 233 PLAQAASMLAQLARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAAAIQNA 292 PLAQA + Q+A DL+ V + + L+ AL + +++ +V VH + I A Sbjct: 236 PLAQALQLARQVADNDLTGQVRVHSADETGQLMQALNHMTQSLGNMVAEVHRSISVIDTA 295 Query: 293 AGDIAAGTEHVVARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACEVVRRS 352 +G+IA+G + ARTE QA +L + A++M++L TV+Q+ H HQA+ L + + + Sbjct: 296 SGEIASGNADLSARTESQASSLEETASAMEELTSTVRQNADHAHQANELVATSSRLAVQG 355 Query: 353 AAEVEQVASAMAAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRTLSSVA 412 A V+QV M I+ SARI D+ G+ID IA Q+ +L +A++ +G GR + VA Sbjct: 356 GAVVDQVVQTMGEIRTGSARIADITGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 415 Query: 413 QDVSALAQRTASAAAEVKSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQLIGQIA 472 +V +LAQR+A+AA E+K+L E ++QQ+ G+ QA M E V SV RV+ L+ +IA Sbjct: 416 TEVRSLAQRSAAAAREIKALIEGSVQQVATGAELVDQAGQTMHEIVDSVARVATLMSEIA 475 Query: 473 EVNLEQTSGIDQVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEFRL 529 + EQ+ GID++ + Q+ TQQN L++Q +AA +L +QT QL A FRL Sbjct: 476 VASREQSRGIDEINHAVTQMDEGTQQNAALVEQAAAAAHSLRDQTRQLAALVARFRL 532 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,075,419 Number of extensions: 35443 Number of successful extensions: 361 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 63 Length of query: 544 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 454 Effective length of database: 1,193,720 Effective search space: 541948880 Effective search space used: 541948880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)