BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0164.p
         (799 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311755|ref|YP_003775847.1| DNA polymerase II protein [Herb...  1607   0.0  

>gi|300311755|ref|YP_003775847.1| DNA polymerase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 790

 Score = 1607 bits (4162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/790 (99%), Positives = 787/790 (99%)

Query: 10  LRPGERAGFILTRHWRDTPAGVEIELWLATDTGAQCLRLPPQQAVAFVPQSEQARVQDLL 69
           +RPGERAGFILTRHWRDTPAGVEIELWLATDTGAQCLRLPPQQAVAFVPQSEQARVQDLL
Sbjct: 1   MRPGERAGFILTRHWRDTPAGVEIELWLATDTGAQCLRLPPQQAVAFVPQSEQARVQDLL 60

Query: 70  RGVAGVELKPLEALKDFSQRPVMGLYARHYRQLLRLEKQLVAAGISVYEADIRPPERYLM 129
           RGVAGVELKPLEALKDFSQRPVMGLYARHYRQLLRLEKQLVAAGISVYEADIRPPERYLM
Sbjct: 61  RGVAGVELKPLEALKDFSQRPVMGLYARHYRQLLRLEKQLVAAGISVYEADIRPPERYLM 120

Query: 130 ERFINAPVAFSGVDDGQGVLGQARLRPLPGYRPPLRLASLDIETSWQGELYSIAIEGCGQ 189
           ERFINAPVAF GVDDGQGVLGQARLRPLPGYRPPLRLASLDIETSWQGELYSIAIEGCGQ
Sbjct: 121 ERFINAPVAFGGVDDGQGVLGQARLRPLPGYRPPLRLASLDIETSWQGELYSIAIEGCGQ 180

Query: 190 RTVYTLAPASGAVQAVDFALHFCDSRRELIEALNAWMARHDPDVIIGWNLIQFDLNVLQK 249
           RTVYTLAPASGAVQAVDFALHFCDSRRELIEALNAWMARHDPDVIIGWNLIQFDLNVLQK
Sbjct: 181 RTVYTLAPASGAVQAVDFALHFCDSRRELIEALNAWMARHDPDVIIGWNLIQFDLNVLQK 240

Query: 250 QADQYQTRLLPGRAAQPLEWRKHGLRAGHLLVSAPGRLVIDGIESLRSAFWNFPSFSLEN 309
           QADQYQTRLLPGRAAQPLEWRKHGLRAGHLLVSAPGRLVIDGIESLRSAFWNFPSFSLEN
Sbjct: 241 QADQYQTRLLPGRAAQPLEWRKHGLRAGHLLVSAPGRLVIDGIESLRSAFWNFPSFSLEN 300

Query: 310 VAQTLLGEGKAIATPYQRMDEIDRMFAEDRTALATYNLKDCELVTRIFAVTDILSFLLER 369
           VAQTLLGEGKAIATPYQRMDEIDRMFAEDR ALATYNLKDCELVTRIFAVTDILSFLLER
Sbjct: 301 VAQTLLGEGKAIATPYQRMDEIDRMFAEDRAALATYNLKDCELVTRIFAVTDILSFLLER 360

Query: 370 ASVTGLPADRSGGSVAAFTHLYLPQLHRKGYVAPNLGDAEALASPGGFVMDSRSGLYDSV 429
           ASVTGLPADRSGGSVAAFTHLYLPQLHRKGYVAPNLGDAEALASPGGFVMDSRSGLYDSV
Sbjct: 361 ASVTGLPADRSGGSVAAFTHLYLPQLHRKGYVAPNLGDAEALASPGGFVMDSRSGLYDSV 420

Query: 430 IVLDYKSLYPSIIRSFLIDPAGLVDGTLNESEAQTVPGFNGARFSRRSHSLPAIIEQIWQ 489
           IVLDYKSLYPSIIRSFLIDPAGLVDGTLNESEAQTVPGFNGARFSRRSHSLPAIIEQIWQ
Sbjct: 421 IVLDYKSLYPSIIRSFLIDPAGLVDGTLNESEAQTVPGFNGARFSRRSHSLPAIIEQIWQ 480

Query: 490 AREQAKAQGNKPLQQALKIIMNSFYGVLGSTGCRFFDSRLASSITRRGHEIMHRTRELIE 549
           AREQAKAQGNK LQQALKIIMNSFYGVLGSTGCRFFDSRLASSITRRGHEIMHRTRELIE
Sbjct: 481 AREQAKAQGNKALQQALKIIMNSFYGVLGSTGCRFFDSRLASSITRRGHEIMHRTRELIE 540

Query: 550 EQGYEVIYGDTDSTFVWLRSAHSDEEARSIGLALTSRINDWWRLHLRQQYGLESALELQY 609
           EQGYEVIYGDTDSTFVWLRSAHSDEEARSIGLALTSRINDWWRLHLRQQYGLESALELQY
Sbjct: 541 EQGYEVIYGDTDSTFVWLRSAHSDEEARSIGLALTSRINDWWRLHLRQQYGLESALELQY 600

Query: 610 EVHYQRFLMPTVRGSDTGSKKRYAGYVRTAEGEDKVTYKGLETVRTDWTPLAQRFQQELY 669
           EVHYQRFLMPTVRGSDTGSKKRYAGYVRTAEGEDKVTYKGLETVRTDWTPLAQRFQQELY
Sbjct: 601 EVHYQRFLMPTVRGSDTGSKKRYAGYVRTAEGEDKVTYKGLETVRTDWTPLAQRFQQELY 660

Query: 670 LRIFRGETYRDYVRSYVAELLAGRLDELLVYRKRLRRQLDHYEKNVPPHVRAARMADQVN 729
           LRIFRGETYRDYVRSYVAELLAGRLDELLVYRKRLRRQLDHYEKNVPPHVRAARMADQVN
Sbjct: 661 LRIFRGETYRDYVRSYVAELLAGRLDELLVYRKRLRRQLDHYEKNVPPHVRAARMADQVN 720

Query: 730 QDDGRPLQYQQGGWITYVMTTAGPEPLEKRSAAIDYGHYLERQLAPVADAILVFVGDSFA 789
           QDDGRPLQYQQGGWITYVMTTAGPEPLEKRSAAIDYGHYLERQLAPVADAILVFVGDSFA
Sbjct: 721 QDDGRPLQYQQGGWITYVMTTAGPEPLEKRSAAIDYGHYLERQLAPVADAILVFVGDSFA 780

Query: 790 ALTSPQQELF 799
           ALTSPQQELF
Sbjct: 781 ALTSPQQELF 790


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,620,558
Number of extensions: 114441
Number of successful extensions: 345
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 1
Length of query: 799
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 706
Effective length of database: 1,179,515
Effective search space: 832737590
Effective search space used: 832737590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)