BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0159.p (470 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311757|ref|YP_003775849.1| transcription regulator protein... 857 0.0 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 92 9e-20 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 92 1e-19 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 88 1e-18 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 77 3e-15 >gi|300311757|ref|YP_003775849.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/436 (98%), Positives = 432/436 (99%) Query: 29 MEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTFVAAPK 88 MEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTFVAAPK Sbjct: 1 MEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTFVAAPK 60 Query: 89 VDLSQLIDLSMNIPPPPAGIDLNDLLRQGMSQVLIHSDADLLMTYHLGGGSSADRAAGAM 148 VDLSQLIDLSMNIPPPPAGIDLNDLLRQGMSQVLIHSDADLLMTYHLGGGSSADRAAGAM Sbjct: 61 VDLSQLIDLSMNIPPPPAGIDLNDLLRQGMSQVLIHSDADLLMTYHLGGGSSADRAAGAM 120 Query: 149 WMQAMLGPVDEARVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVM 208 WMQAMLGPVDEARVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVM Sbjct: 121 WMQAMLGPVDEARVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVM 180 Query: 209 AVDVDDEGMRPDLLMTMARRHQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRII 268 AVDVDDEGMRPDLLMTMARRHQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRII Sbjct: 181 AVDVDDEGMRPDLLMTMARRHQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRII 240 Query: 269 EDDPYWRFAAHAPRPLAHYAPGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRS 328 EDDPYWRFAAHAPRPLAHYAPGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRS Sbjct: 241 EDDPYWRFAAHAPRPLAHYAPGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRS 300 Query: 329 FVLMSTPLMTALSTQWIHDGTAATLLEGIRSEAWARHELALRTLGGAGLSAGGGIHLWKA 388 FVLMSTPLMTALSTQWIHDGTAATLLEGIRSEAWARHELALRTLGGAGLSAGGGIHLWKA Sbjct: 301 FVLMSTPLMTALSTQWIHDGTAATLLEGIRSEAWARHELALRTLGGAGLSAGGGIHLWKA 360 Query: 389 LPAHWQGQEFVLKARQSGLNVVSQSSFAVPLEGREPGADSGGQGACIRISLGRSRSRFEL 448 LPAHWQGQEFVLKARQ+GLNVVSQSSFAVP EGREPGADSGGQGACIRISLGRSRSRFEL Sbjct: 361 LPAHWQGQEFVLKARQAGLNVVSQSSFAVPPEGREPGADSGGQGACIRISLGRSRSRFEL 420 Query: 449 VNALRRLMELAAPATP 464 VNALRRLMELA +P Sbjct: 421 VNALRRLMELAQRRSP 436 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 113/262 (43%), Gaps = 47/262 (17%) Query: 157 VDEARVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVMAVDVDDEG 216 + +VL G+Q L L G +L E +Y G L A G + +V D+ G Sbjct: 97 ISAEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPSDEFG 156 Query: 217 MRPDLLMTMARRHQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRIIEDDPYWRF 276 ++P+ + +A AR++Y P QNPT RT+P RR ++ RL L +IEDDPY Sbjct: 157 LQPETIEAIA--GGARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGAL 214 Query: 277 A-AHAPRP-LAHYAPGHVFYVSTLSKCLLPGLRTAYVLMPE------RQAQEEVLGALRS 328 + +AP P + P V Y+ + SK L PG+R YV+ P QA++ Sbjct: 215 SYQNAPLPKMLSMNPSGVIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQ-------- 266 Query: 329 FVLMSTPLMTALSTQWIHDGTAATLLEGIRSEAWARHELALRTLGGAGLSA--------- 379 +T L TA TQ + + E I+ +H +R L G A Sbjct: 267 ----ATDLHTAQLTQMV-------VYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYF 315 Query: 380 ---------GGGIHLWKALPAH 392 GG+ +W LP H Sbjct: 316 PASCSWSKPEGGMFIWVTLPEH 337 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 171/417 (41%), Gaps = 38/417 (9%) Query: 24 QIVGFMEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTF 83 Q+ + I LR G+RLP RQ A++ + +TV AY + R +L+AR AG F Sbjct: 24 QVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGAGFF 83 Query: 84 VAA---------------PKVDLSQLID--LSMNIPPPPAGID------LNDLLRQGMSQ 120 VAA P +D + L+ + P AG LND +G+ Q Sbjct: 84 VAARAGQSGQHAVFVPPEPVIDSAWLLSEMFADERVPIKAGCGWLPGKWLND---EGLHQ 140 Query: 121 V---LIHSDADLLMTYHLGGGSSADRAAGAMWMQAMLGPVDEARVLACPGAQSALAALVL 177 +I S + Y G + R ++ + +VL GA AL ++ Sbjct: 141 AERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVIR 200 Query: 178 SQTRPGEVILAEPLAYPGLLTVAAHLGRRVMAVDVDDEGMRPDLLMTMARRHQARLVYLN 237 + T+PG+ +L + Y L+ + G V+ V G+ D+L T+AR H ++ + Sbjct: 201 TMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLARTHHPKMFFTT 260 Query: 238 PTLQNPTTRTMPATRRAEIAALATRLDLRIIEDDPYWRFAAHAPRPLAHYAPG--HVFYV 295 LQNPT + + A R ++EDD + R A P+ G V YV Sbjct: 261 SVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIF-RELGQATDPMLAALDGLQRVIYV 319 Query: 296 STLSKCLLPGLRTAYVLMPERQAQEEVLGALRSFVLMSTPLMTALSTQWIHDGTAATLLE 355 + SK + P LR Y+ +R+ +++ L ++ + L + +G ++ Sbjct: 320 GSYSKTIAPSLRVGYIAC-QRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHRRHVQ 378 Query: 356 GIRSEAWARHELALRTLGGAGLS----AGGGIHLWKALP-AHWQGQEFVLKARQSGL 407 + + + L GL+ A GG+ W + +E +ARQ G+ Sbjct: 379 TLNATLLSAQATLNAKLSEVGLTPFTAARGGMFSWATIEGCELSAREIADRARQKGI 435 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 126/492 (25%), Positives = 189/492 (38%), Gaps = 82/492 (16%) Query: 20 PRYLQIVGFMEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGS 79 P Y ++ + AI L GDR+P R L QV L+T + LEAR Sbjct: 41 PLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPR 100 Query: 80 AGTFVAAPK---------------VDLSQLIDL----SMNIPPPPAG---IDLN------ 111 +G FV P+ +D Q + + S I AG IDL+ Sbjct: 101 SGYFVRQPRRSAIRPVQEPKSLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAP 160 Query: 112 -----DLLRQGMSQVLIHSDADLLMTYHLGGGSSADRAAGAMWMQAMLGPVDEARVLACP 166 + L+Q + L +LL + G++ R A A +D V+ Sbjct: 161 QLYAVETLKQAAMRAL-RERPELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTH 219 Query: 167 GAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVMAVDVD-DEGMRPDLLMTM 225 G AL + + PG+ I E Y GLL +LG + + + G+ + L Sbjct: 220 GCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELA 279 Query: 226 ARRH-QARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRIIEDDPYWRFAAHAPRPL 284 R + + V + P LQNP MP + ++ L +L L +IEDD Y A + P Sbjct: 280 VRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPS 339 Query: 285 AHYA---PGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRSFVLMSTPLMTALS 341 + + G+V Y ++L+K L PG+R ++ G V M T + Sbjct: 340 SLKSRDRNGNVIYCASLNKVLAPGMRLGWMNG----------GRWHERVKMLKFTHTRAN 389 Query: 342 TQWIHDGTAATLLEGIRSEAWARHELALRTL-----------------GGAGLS-AGGGI 383 +W T T + I S A+ RH LR + G L+ GG+ Sbjct: 390 EEW----TQVTAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGV 445 Query: 384 HLWKALPAHWQGQEFVLKARQSGLNVVSQSSFAVPLEGREPGADSGGQGACIRISLGRSR 443 LW LP Q+ +A G+ V + F ++S G +RI G Sbjct: 446 GLWVELPVQVCSQQLFERALAEGVGVSPGAIF----------SNSSRYGHFVRICCGHPF 495 Query: 444 SRFELVNALRRL 455 +R EL ALRRL Sbjct: 496 NR-ELDQALRRL 506 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 117/447 (26%), Positives = 178/447 (39%), Gaps = 52/447 (11%) Query: 24 QIVGFMEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTF 83 QI + +AI L G +LP R LA L TVT AY + LE+R AGTF Sbjct: 48 QIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAYEQLLAEGYLESRPGAGTF 107 Query: 84 VAAPKVD-LSQLIDLSMNIPPPPAGIDLND----LLRQ-------------GMSQVLI-- 123 VA D + + ++ + P +L+ L RQ G+ V Sbjct: 108 VADTAPDQIPEAVERPEPLTDPSGKSELSARGAMLTRQAGVGERQWGAFMPGVPDVTCVP 167 Query: 124 -------------HSDADLLMTYHLGGGSSADRAAGAMWMQ-AMLGPVDEARVLACPGAQ 169 S+ADLL TY G G + R A +++ A ++VL G Sbjct: 168 YKIWGRLQNKHWRRSNADLL-TYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITTGIH 226 Query: 170 SALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVMAVDVDDEGMRPDLLMTMAR-R 228 +L +V G+ E Y G +V LG + + + VD EGMR M +A R Sbjct: 227 QSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMR----MRLANLR 282 Query: 229 HQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRIIEDDPYWRFAAHAPRPLAHY- 287 R + P+ Q P M +RR + A + IIEDD F + RPLA Sbjct: 283 RPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFR-YGGRPLASLQ 341 Query: 288 ---APGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRSFVLMSTPLMTALSTQW 344 V Y+ T SK + PGLR ++++PE A+ G + + A + Sbjct: 342 GMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTG-IAELYRNGQVFLQATLADF 400 Query: 345 IHDGTAATLLEGIRSEAWARHELALRTLG---GAGLSAGG---GIHLWKALPAHWQGQEF 398 + +G A+ + +R R +L +++ G ++ G G+HL LP Sbjct: 401 MAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLI 460 Query: 399 VLKARQSGLNVVSQSSFAVPLEGREPG 425 +A +G+ V S + + G G Sbjct: 461 CEQALAAGIVVRPLSRYYMHARGARRG 487 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,375,604 Number of extensions: 53269 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 9 Length of query: 470 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 381 Effective length of database: 1,198,455 Effective search space: 456611355 Effective search space used: 456611355 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)