BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0158.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamil...   458   e-130
gi|300313655|ref|YP_003777747.1| signal peptide protein [Herbasp...    69   4e-13
gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamil...    60   2e-10

>gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  458 bits (1178), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/243 (97%), Positives = 237/243 (97%), Gaps = 3/243 (1%)

Query: 1   MANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVK 60
           MANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVK
Sbjct: 1   MANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVK 60

Query: 61  AIKAIGKRVTLVGHSMGGIAVTAAAEQAADCLARIIYLCAYVPVNGDSLSALSDLAPARP 120
           AIKAIGKRVTLVGHSMGGIAVTAAAE+AAD LARIIYLCAYVPVNGDSLSALSDLAPAR 
Sbjct: 61  AIKAIGKRVTLVGHSMGGIAVTAAAERAADSLARIIYLCAYVPVNGDSLSALSDLAPARL 120

Query: 121 PSPVALAHD---ALASDTQPSARVETFMQDAPYAVAHWAAPQFRAQAMAPMTTPVQVSEQ 177
           PSPVAL HD   ALASDTQPSARVETFMQDAPYAVAHWAAPQFRAQAMAPMTTPVQVSEQ
Sbjct: 121 PSPVALGHDALAALASDTQPSARVETFMQDAPYAVAHWAAPQFRAQAMAPMTTPVQVSEQ 180

Query: 178 AYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRPTETAEMLHRMV 237
           AYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRPTETAEMLHRMV
Sbjct: 181 AYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRPTETAEMLHRMV 240

Query: 238 TEL 240
           TEL
Sbjct: 241 TEL 243


>gi|300313655|ref|YP_003777747.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 31/244 (12%)

Query: 2   ANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVKA 61
           A+ +++HGA+     W  V   L  +G +V ++  P +          +L+    A  +A
Sbjct: 37  ASVVIVHGAFADGSDWAKVIPLLQAKGVKVTAVQNPLT----------SLADDVAAARRA 86

Query: 62  IKAIGKRVTLVGHSMGGIAVTAAAEQAADCLARIIYLCAYVPVNGDSLSALSDLAPARPP 121
           I     +V LVGHS GG  +T A     D +A ++Y+ A+ P  G +   L    P  PP
Sbjct: 87  IDNQPGKVVLVGHSWGGTVITEAGNH--DKVASLVYVAAFAPDAGQATGDLGKDLPV-PP 143

Query: 122 SPVALAHD-ALASDTQPSARVETFMQDAPYAVAHWAAPQFRAQAMAPMTTPV-------Q 173
               L+ D A  +   P+A    F QD P           +A  MA    P+       +
Sbjct: 144 GIAKLSVDKAGFASLPPAALAADFAQDVPAK---------QAAVMAATQGPIAMKAFGDK 194

Query: 174 VSEQAYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRPTETAEML 233
           V   A+   P  YIV T+DR I P L+R   A+   ++  EL + H P  SRP + A+++
Sbjct: 195 VETAAWKTRPSWYIVSTKDRMIQPALERAF-AKQINAKTTELPASHVPQQSRPADVAKVI 253

Query: 234 HRMV 237
              V
Sbjct: 254 LEAV 257


>gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 104/235 (44%), Gaps = 24/235 (10%)

Query: 3   NFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVKAI 62
           + +L+HGA+     W  V A L  +G+ V ++  P             LS  AD +    
Sbjct: 23  DIVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNP-------------LSSLADDVSATR 69

Query: 63  KAIGKR---VTLVGHSMGGIAVTAAAEQAADCLARIIYLCAYVPVNGDSLSALSDLAPAR 119
           + I ++   V LVGHS GG  +TAA    A  +  ++YL A  P +G S++ +     A 
Sbjct: 70  RVIDRQPHEVLLVGHSWGGAVITAAGN--ASKVRGLVYLSALAPDSGQSVAQMLQRLHA- 126

Query: 120 PPSPVALAHDALASDTQPSARVETFMQD-APYAVAHWAAPQFRAQAMAPMTTPVQVSEQA 178
           P S +    D L      +A  +    D +P  V H AA Q   Q +A       +   A
Sbjct: 127 PMSGMQPDADGLIWLDDAAAYAQVMAGDVSPEQVRHLAAVQ---QPIAAAAFGEPLVHAA 183

Query: 179 YGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRPTETAEML 233
           +   P  Y++   D+A+   +QR +A   G +R ++L S H   +S P   A+ +
Sbjct: 184 WRDKPSWYLITEGDQALPTAVQRKLATLLG-ARTRQLISSHMSLVSHPQVVADFI 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,177
Number of extensions: 31276
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)