BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0155.p (213 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311761|ref|YP_003775853.1| GntR family transcription regul... 430 e-122 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 62 3e-11 gi|300312737|ref|YP_003776829.1| transcription regulator protein... 59 3e-10 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 58 6e-10 >gi|300311761|ref|YP_003775853.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 430 bits (1106), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/213 (99%), Positives = 212/213 (99%) Query: 1 MSELNNVPSSTVDRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAE 60 MSELNN PSSTVDRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAE Sbjct: 1 MSELNNAPSSTVDRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAE 60 Query: 61 GLVLTLPRRGVRVTMVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAA 120 GLVLTLPRRGVRVTMVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAA Sbjct: 61 GLVLTLPRRGVRVTMVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAA 120 Query: 121 AGSLVEWDAANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHA 180 AGSLVEWDAANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHA Sbjct: 121 AGSLVEWDAANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHA 180 Query: 181 LIIEALKERKIDRAVQLLSMHIGTMERVGFVAG 213 LIIEALKERKIDRAVQLLSMHIGTMERVGFVAG Sbjct: 181 LIIEALKERKIDRAVQLLSMHIGTMERVGFVAG 213 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 101/200 (50%), Gaps = 14/200 (7%) Query: 13 DRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVR 72 +++ EVLR R++ G+ G L+++ +A+E S PVR A R+L +GL +G+ Sbjct: 6 EKVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGIH 65 Query: 73 VTMVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAAA------GSLVE 126 V ++E ++R LE A +A + + +A L +++ A A S+ + Sbjct: 66 VAAWSDWDIEETFQLRMLLEPYAASLAAERGDEKMLALLRESNEKMAQAIKSGGLHSVEK 125 Query: 127 WDAANNLFHDILSSECGMPRLLAVLKQL----QLTNSRYLFSTGFKRGWQPRSDHDHALI 182 AAN++FH + PRL A+L+ + + S +L +++ +S H H + Sbjct: 126 IQAANSIFHRTILEYSASPRLRAMLETIIDMPIIVRSFHL----YEKSELEQSLHHHQDL 181 Query: 183 IEALKERKIDRAVQLLSMHI 202 + A++ R + A Q++ +H+ Sbjct: 182 LLAMQARDAELARQVMQLHL 201 >gi|300312737|ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 4/115 (3%) Query: 1 MSELNNVPSSTV-DRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEA 59 +S + + +T+ +R+ + L I G++ G L +A +S +PVREA RQL A Sbjct: 9 LSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAA 68 Query: 60 EGLVLTLPRRGVRVTMVDRATVKENAEMRGSLEILALRHSARKF---GAEHIARL 111 EG + LP R +RV ++ + +E ++R +LE LA+ H+AR G E +ARL Sbjct: 69 EGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARL 123 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 57.8 bits (138), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 23/210 (10%) Query: 6 NVPSSTVDRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLT 65 + P + + + E + I +++ G L + +A+EF S P+REA QL + G+V Sbjct: 2 DTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEM 61 Query: 66 LPRRGVRVTMVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAAAGSLV 125 PRRG V + + E E+ E + R +AR+ A L AH AC AA Sbjct: 62 RPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDAN 121 Query: 126 EWDAA---NNLFHD---------ILSSEC-GMPRLLAVLKQLQLTNSRYLFSTGFKRGWQ 172 + DA N FHD L+ + + R L ++LQL R + F Sbjct: 122 DPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQL-RVRDRLKSSFD---- 176 Query: 173 PRSDHDHALIIEALKERKIDRAVQLLSMHI 202 +H +++A+ ++ V LL HI Sbjct: 177 -----EHQAVVDAIISGDAEKTVDLLREHI 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 621,269 Number of extensions: 23364 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 7 Length of query: 213 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 132 Effective length of database: 1,236,335 Effective search space: 163196220 Effective search space used: 163196220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)