BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0154.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311762|ref|YP_003775854.1| biotin synthase [Herbaspirillum...   684   0.0  

>gi|300311762|ref|YP_003775854.1| biotin synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 347

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/347 (97%), Positives = 340/347 (97%), Gaps = 6/347 (1%)

Query: 1   MSHCPSAPAGQTSAPLHFHRPANAA------RADDTRRDAVAALFELPFLDLLYQAQTVH 54
           MSHCPSAPAGQTSAPLHFHRPANAA      RADD RRDAVAALFELPFLDLLYQAQTVH
Sbjct: 1   MSHCPSAPAGQTSAPLHFHRPANAANAAHSTRADDARRDAVAALFELPFLDLLYQAQTVH 60

Query: 55  RQHHPANQVQLSSLLSIKTGGCAEDCGYCAQSAHHKDAGVPAGKLMAVDEVVQAARAARD 114
           RQHHPANQVQLSSLLSIKTGGCAEDCGYCAQSAHHK+AGVPAGKLMAVDEVVQAARAARD
Sbjct: 61  RQHHPANQVQLSSLLSIKTGGCAEDCGYCAQSAHHKEAGVPAGKLMAVDEVVQAARAARD 120

Query: 115 QGATRFCMGAAWRNPKERDMPALTEMVSQVRALGLETCMTLGMLEQAQAEALKEAGLDYY 174
           QGATRFCMGAAWRNPKERDMPALTEMVSQVRALGLETCMTLGMLEQAQAEALKEAGLDYY
Sbjct: 121 QGATRFCMGAAWRNPKERDMPALTEMVSQVRALGLETCMTLGMLEQAQAEALKEAGLDYY 180

Query: 175 NHNLDTAPDFYGQVISTRSYQDRLDTLERVHLAGLSVCCGGIIGMGETRAQRAGLIAQLA 234
           NHNLDTAPDFYGQVISTRSYQDRLDTLERVHLAGLSVCCGGIIGMGE+RAQRAGLIAQLA
Sbjct: 181 NHNLDTAPDFYGQVISTRSYQDRLDTLERVHLAGLSVCCGGIIGMGESRAQRAGLIAQLA 240

Query: 235 ALPVPPQSVPINHLVPIAGTPLQDVPALDEFEFVRTVAVARIALPHAVIRLSAGRESMSD 294
           ALPVPPQSVPINHLVPIAGTPLQDVPALDEFEFVRTVAVARIALPHAVIRLSAGRESMSD
Sbjct: 241 ALPVPPQSVPINHLVPIAGTPLQDVPALDEFEFVRTVAVARIALPHAVIRLSAGRESMSD 300

Query: 295 ATQALCFAAGANSIFLGSKLLTTPNAPVSSDLDLLARLGLQATAASA 341
           ATQALCFAAGANSIFLGSKLLTTPNAPVSSDLDLLARLGLQATAASA
Sbjct: 301 ATQALCFAAGANSIFLGSKLLTTPNAPVSSDLDLLARLGLQATAASA 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,017,079
Number of extensions: 41376
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)