BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0152.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate (7-keto-...   759   0.0  
gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase ...   140   2e-34

>gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate
           (7-keto-8-aminopelargonate) synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/385 (98%), Positives = 383/385 (99%)

Query: 1   MPDFHQQLDELARQSLLRTRRTVSSAQGPLLTVEARPYLSFCSNDYLGLANHPAITAAAV 60
           M DFHQQLDELARQSLLRTRRTVSSAQGPLLTVEARPYLSFCSNDYLGLANHPAITAAAV
Sbjct: 1   MHDFHQQLDELARQSLLRTRRTVSSAQGPLLTVEARPYLSFCSNDYLGLANHPAITAAAV 60

Query: 61  TALGQYGMGAAASALISGHSAAHETLERALADFTGLPAALGFGSGYMANMGVIGALVGAG 120
           TALGQYGMGAAASALISGHSAAHETLERALA+FTGLPAALGFGSGYMANMGVIGALVGAG
Sbjct: 61  TALGQYGMGAAASALISGHSAAHETLERALAEFTGLPAALGFGSGYMANMGVIGALVGAG 120

Query: 121 DTVVVDRLSHASLIDGARLSGASLKVFPHNDTQRLDQVLARCGSGRKLVVTDAVFSMDGD 180
           DTVVVDRLSHASLIDGARLSGASLKVFPHNDTQRLD VLARCGSGRKLVVTDAVFSMDGD
Sbjct: 121 DTVVVDRLSHASLIDGARLSGASLKVFPHNDTQRLDHVLARCGSGRKLVVTDAVFSMDGD 180

Query: 181 QAPLAELAEICARHGAWLLVDDAHGFGVLGPQGRGSLAHAGVRAPHVLCMGTLGKAAGVA 240
           QAPL+ELAEICARHGAWLLVDDAHGFGVLGPQGRGSLAHAGVRAPHVLCMGTLGKAAGVA
Sbjct: 181 QAPLSELAEICARHGAWLLVDDAHGFGVLGPQGRGSLAHAGVRAPHVLCMGTLGKAAGVA 240

Query: 241 GAFVAGERDLLAWIMQRARTYMFSTAHPPALAAAATASLAVIAADEWRRTHLRALVAQLR 300
           GAFVAGERDLLAWIMQRARTYMFSTAHPPALAAAATASLAVIAADEWRRTHLRALVAQLR
Sbjct: 241 GAFVAGERDLLAWIMQRARTYMFSTAHPPALAAAATASLAVIAADEWRRTHLRALVAQLR 300

Query: 301 KGLAGLSWQLLPSQTPIQPLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRIS 360
           KGLAGLSWQLLPSQTPIQPLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRIS
Sbjct: 301 KGLAGLSWQLLPSQTPIQPLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRIS 360

Query: 361 LSALHTQEQVAQLIEALVQAEQVAA 385
           LSALHTQEQVAQLIEALVQAEQVAA
Sbjct: 361 LSALHTQEQVAQLIEALVQAEQVAA 385


>gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 166/365 (45%), Gaps = 16/365 (4%)

Query: 28  GPLLTVEARPYLSFCSNDYLGLANHPAITAAAVTALGQYGMGAAASALISGHSAAHETLE 87
           G  ++   R Y++F   +YLG      +  A V +  +YG+    S    G    H  LE
Sbjct: 36  GAEVSRNGRSYVNFSGINYLGWQQDARVLDAFVESARRYGLSTGGSRATQGICEPHLRLE 95

Query: 88  RALADFTGLPAALGFGSGYMANMGVIGAL-----------VGAGDTVVV-DRLSHASLID 135
             L+   G    L F SG +AN+G I A+           +   D V++ DR  H SL  
Sbjct: 96  NMLSTLHGKERTLSFASGMLANIGFINAMTAKFGFSSRSAIDNRDAVLIFDRECHWSLWK 155

Query: 136 GAR--LSGASLKVFPHNDTQRLDQVLARCGSGRKLVVTDAVFSMDGDQAPLAELAEICAR 193
            A     G SL  F HND   L  VLA+ G  + +VV ++++S DG  AP+ E+ ++C R
Sbjct: 156 AASHLKFGESLLAFKHNDVTDLTAVLAKLGGRKAIVVFESLYSSDGSVAPIGEILDVCQR 215

Query: 194 HGAWLLVDDAHGFGVLG-PQGRGSLAHAGVRAPHVLCMGTLGKAAGVAGAFVAGERDLLA 252
             A   +DDA+GF V G PQ         +R    + M +L K+ G+ G  ++G  + + 
Sbjct: 216 FDALSYIDDANGFMVYGSPQRPFHEQFRHMRRADFI-MVSLSKSVGLEGGAISGSAEFID 274

Query: 253 WIMQRARTYMFSTAHPPALAAAATASLAVIAADEWRRTHLRALVAQLRKGLAGLSWQLLP 312
                + T +F+ A  P  A  A   +  + A+ W         A  R  L     +L  
Sbjct: 275 AFEVLSGTSIFTAAIQPPTADLAVFIIERLRANPWIMEDYLDRSAMFRLKLQASGLRLND 334

Query: 313 SQTPIQPLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRISLSALHTQEQVAQ 372
           + + I  ++IG + +A  + Q L +QG  VP    P V    A +R+ L  LHT+ Q+ +
Sbjct: 335 TASYITSVMIGRDDKAEQVRQALEQQGFCVPIFRYPAVKPNQALMRLILHRLHTEPQIDR 394

Query: 373 LIEAL 377
            + +L
Sbjct: 395 FVASL 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,203,009
Number of extensions: 51812
Number of successful extensions: 296
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)