BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0147.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 464 e-132 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 201 4e-53 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 197 5e-52 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 195 2e-51 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 188 3e-49 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 464 bits (1193), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/233 (99%), Positives = 232/233 (99%) Query: 1 MSQCLLQAQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQG 60 MSQCLLQ QGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQG Sbjct: 1 MSQCLLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQG 60 Query: 61 QVRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQAL 120 Q+RLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQAL Sbjct: 61 QIRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQAL 120 Query: 121 FELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMI 180 FELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMI Sbjct: 121 FELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMI 180 Query: 181 QELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQSGL 233 QELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQSGL Sbjct: 181 QELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQSGL 233 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 201 bits (511), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 111/228 (48%), Positives = 146/228 (64%), Gaps = 3/228 (1%) Query: 2 SQCLLQAQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQ 61 + LL GL Y + +L G+DL ++ GE+V+++GRNGAG+ST LKALMGLL R G Sbjct: 4 TSLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR-GD 62 Query: 62 VRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQP-PRPGAPHWTPQAL 120 R GRDI L H ARLG+GYVPE R +F LSV +NL GR+P P+PG W + Sbjct: 63 CRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGR-GWCEDDI 121 Query: 121 FELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMI 180 LFP L Q +SGGEQQML + R L+GNP LLL+DEP+EG+AP +VEQ+A + Sbjct: 122 HALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARAL 181 Query: 181 QELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQ 228 QEL+ G+A+LL EQ A + R Y++ +G +V GTP L A + Sbjct: 182 QELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQE 229 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 197 bits (502), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 102/227 (44%), Positives = 145/227 (63%), Gaps = 5/227 (2%) Query: 5 LLQAQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQVRL 64 +LQ L WY ++HIL ++L + GEVV L+GRNGAG++TTL+++MGL+ R+G +++ Sbjct: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 Query: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPH--WTPQALFE 122 G++ LA H+ A G+GY PE+R IF+ LS ENL PP + ++E Sbjct: 71 NGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENL---MLPPFVSKTDKGMSIDEIYE 127 Query: 123 LFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQE 182 +FPNL G R+SGGEQQML +AR L RLLLLDE SEG+APVIV+ +A MI Sbjct: 128 MFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITT 187 Query: 183 LKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQ 229 LK G I++ EQN FA+ + DR Y+++ G+IV + + L+A Q Sbjct: 188 LKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQ 234 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/224 (45%), Positives = 151/224 (67%), Gaps = 4/224 (1%) Query: 5 LLQAQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQVRL 64 +LQ + +HG+Y +HIL G+ L++ AGEVV L+GRNGAGK+TTLK+++G++ QG+V Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 G+ I L ++ A G+ VPE R IF L+V ENL + W + ++ +F Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESA----WGLEEIYAIF 117 Query: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 P L + GG++SGGEQQML IAR LM +PR+L+LDEP EG+APVIV+++ A I+++K Sbjct: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIK 177 Query: 185 RSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQ 228 +G++I+L EQNL + + DR Y+++QGRIV G+ A A + Sbjct: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADE 221 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 188 bits (478), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 98/217 (45%), Positives = 138/217 (63%), Gaps = 1/217 (0%) Query: 5 LLQAQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQVRL 64 +LQ L+ +Y AH L G+ L+++ G+V++L+GRNG GK+T LK LMG+L +G V Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 G DI KL PHQRA+LG+ YVP+ R IF L+V EN+ G ++ELF Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 P L M R GG +SGG+QQ L IAR L+ P+L++LDEP+EG+ P I++ + +I L+ Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 185 RSG-IAILLCEQNLHFASLVCDRGYLLDQGRIVAAGT 220 + G I ILLCEQ FA + D ++ +G +VAAGT Sbjct: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGT 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 804,849 Number of extensions: 36107 Number of successful extensions: 522 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 139 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)