BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0146.p (253 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 502 e-143 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 187 8e-49 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 169 2e-43 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 169 3e-43 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 166 2e-42 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 502 bits (1293), Expect = e-143, Method: Compositional matrix adjust. Identities = 252/253 (99%), Positives = 253/253 (100%) Query: 1 MSLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEV 60 MSLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEV Sbjct: 1 MSLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEV 60 Query: 61 LLDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL 120 LLDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL Sbjct: 61 LLDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL 120 Query: 121 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER 180 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER Sbjct: 121 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER 180 Query: 181 QALMALTRRLVNERGMAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVRE 240 QALMALTRRLVNERG+AVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVRE Sbjct: 181 QALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVRE 240 Query: 241 LYFGSGASFGGAA 253 LYFGSGASFGGAA Sbjct: 241 LYFGSGASFGGAA 253 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 187 bits (474), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 104/254 (40%), Positives = 155/254 (61%), Gaps = 13/254 (5%) Query: 2 SLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVL 61 ++L+V LS FGG+ A++ +S A+ ++ A+IGPNGAGK+T FN I+G RP GE++ Sbjct: 7 TMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIM 66 Query: 62 LDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQ------LWR 115 LDG SI + ++ ++G+ RTFQ F SMTV++++ L++ H+++ L Sbjct: 67 LDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENL---LVAQHQQVNTNLLSGLLKT 123 Query: 116 PADSLFRQQAME----LLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEP 171 PA Q+A++ LDQ+G+ A A R L+YG +RVE+A + PRLLL+DEP Sbjct: 124 PAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEP 183 Query: 172 TAGMATQERQALMALTRRLVNERGMAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAV 231 AG+ QE+Q L L RL E G+AVL EH M ++ +DRILV+ G+ + G P Sbjct: 184 AAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQ 243 Query: 232 VRADARVRELYFGS 245 VR+D RV + Y G Sbjct: 244 VRSDERVIKAYLGE 257 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 169 bits (429), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 147/248 (59%), Gaps = 4/248 (1%) Query: 3 LLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLL 62 +L+ + L+K F G A+ ++ + G + ALIGPNGAGK+TCFNL+ L P G++L Sbjct: 5 ILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILF 64 Query: 63 DGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL-- 120 +G+ IT +I R+G+ R+FQ+SA F M+VL++V+ L + W+ +SL Sbjct: 65 NGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLKQ 124 Query: 121 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER 180 ++AM+LL++V + + A L YG + +E+A L+ P L+L+DEPT GM ++ Sbjct: 125 LDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHEDV 184 Query: 181 QALMALTRRLVNERGMAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVRE 240 + AL +++ G +L EH+M V+ DRI VL RG L+A+G+ V + +V E Sbjct: 185 DRVTALIKKV--SAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVME 242 Query: 241 LYFGSGAS 248 Y GS ++ Sbjct: 243 AYMGSTSA 250 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 12/252 (4%) Query: 3 LLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLL 62 LLQ+ +SK+FGG+ L+ ++F + G++ LIGPNGAGK+T FNLI G LR G + Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 63 DGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRR-----LWQL--WR 115 + I + +I RG+ RTFQ F MT+L++V + H L L +R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 116 PADSLFRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGM 175 A+ R++A+ELL V + +A L+YG+ +++E A AL+ P+LLL+DEP AGM Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 176 ATQERQALMALTRRLVN--ERGMAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVR 233 E+ LM+ +VN +RG + EH M V +RI VL G+++A+G P ++ Sbjct: 182 NPAEKTELMS---EIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIK 238 Query: 234 ADARVRELYFGS 245 + V E Y G Sbjct: 239 NNQEVIEAYLGK 250 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 166 bits (419), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 144/254 (56%), Gaps = 12/254 (4%) Query: 2 SLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVL 61 +LL+++ +SK FGG+ AL + + GQ+ LIGPNGAGK+T FN+I G +PD G Sbjct: 4 TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFE 63 Query: 62 LDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLW------- 114 LDG+ + + + G+ RTFQ F MTVL++V H R ++ Sbjct: 64 LDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVG--CHVRTKQNVFGAVFRHK 121 Query: 115 --RPADSLFRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPT 172 R ++ R+++ +LLD VG+ A+R L+YGD +R+E+A AL+ P+LL +DEP Sbjct: 122 AAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPA 181 Query: 173 AGMATQERQALMALTRRLVNERGMAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVV 232 AGM E+ L L ++ E G +L EH + ++ +RI VL G+ +A+G PA V Sbjct: 182 AGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 233 RADARVRELYFGSG 246 + + V E Y G+G Sbjct: 241 QKNPAVIEAYLGAG 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 635,216 Number of extensions: 24136 Number of successful extensions: 512 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 140 Length of query: 253 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 170 Effective length of database: 1,226,865 Effective search space: 208567050 Effective search space used: 208567050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)