BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0139.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311777|ref|YP_003775869.1| cytochrome o ubiquinol oxidase ...   422   e-119
gi|300313443|ref|YP_003777535.1| cytochrome c oxidase subunit II...    88   5e-19

>gi|300311777|ref|YP_003775869.1| cytochrome o ubiquinol oxidase
           subunit III protein [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  422 bits (1085), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG 60
           MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG
Sbjct: 1   MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG 60

Query: 61  PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL 120
           PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL
Sbjct: 61  PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL 120

Query: 121 YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL 180
           YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL
Sbjct: 121 YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL 180

Query: 181 MCLSMFWHFLDVVWIGVFTFVYLMGVLP 208
           MCLSMFWHFLDVVWIGVFTFVYLMGVLP
Sbjct: 181 MCLSMFWHFLDVVWIGVFTFVYLMGVLP 208


>gi|300313443|ref|YP_003777535.1| cytochrome c oxidase subunit III
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score = 87.8 bits (216), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 60  GPTGA-----ELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAG 114
           GP G       +   P+  +NT LLL S +T   +  AM+A  +  T  WL +T LLGA 
Sbjct: 136 GPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRTQTAVWLFLTILLGAV 195

Query: 115 FIYFELYEFLHLIHEGAGPTRSG-FLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLT 173
           F+ F+ YE++H   E      SG + ++FF L G HG HVT G I L V+L+++ +   T
Sbjct: 196 FMGFQAYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFT 255

Query: 174 EANGRRLMCLSMFWHFLDVVWIGVFTFVY 202
             +       + +WHF+DVVW+G++  VY
Sbjct: 256 PTHHFAFEGAAWYWHFVDVVWLGLYVVVY 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 654,947
Number of extensions: 25000
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)