BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0131.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...   587   e-169
gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822...    67   2e-12
gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823...    65   1e-11

>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  587 bits (1514), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 287/288 (99%), Positives = 287/288 (99%)

Query: 1   MQAAPRFSRTVRHPGAPDPQRIVSLAGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTV 60
           MQAAPRFSRTVRHPGAPDPQRIVSLAGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTV
Sbjct: 1   MQAAPRFSRTVRHPGAPDPQRIVSLAGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTV 60

Query: 61  RFGQLAIAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRKDGEPFVHCHAV 120
           RFGQLAIAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRKDGEPFVHCHAV
Sbjct: 61  RFGQLAIAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRKDGEPFVHCHAV 120

Query: 121 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLAEQAVT 180
           WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLAEQ VT
Sbjct: 121 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLAEQTVT 180

Query: 181 STGKRVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEI 240
           STGKRVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEI
Sbjct: 181 STGKRVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEI 240

Query: 241 LIRAGEVRQGRARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQEL 288
           LIRAGEVRQGRARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQEL
Sbjct: 241 LIRAGEVRQGRARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQEL 288


>gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 3/167 (1%)

Query: 9   RTVRHPGAPDPQRIVSL-AGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTVRFGQLAI 67
           R   H G P   R + L A PA +L  TL+AG  +  A+   L+R G  GG  R      
Sbjct: 10  RKFLHAGQPSYPRTLDLEADPAEELRITLQAGTLVGPALRRVLARYGQRGGVGRLCGGTA 69

Query: 68  AELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRK-DGEPFVHCHAVWRDRQG 126
             LH+       D      Y  PH +E          T G+  DG+  +HCH+ + D  G
Sbjct: 70  RRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGFIDGDG 129

Query: 127 QRQGGHLMMEKTLVGADTPAQAWGLHD-ATMATRYDPETNFTLFYPT 172
              GGHL+++   VG D       L   +      D ET+F+L +PT
Sbjct: 130 TLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPT 176


>gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 12/115 (10%)

Query: 185 RVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDG-----RVLEDR--A 237
           ++V+AR++P+QDLT +VEA C +HGM  AIVRG++GS+I A          R +E     
Sbjct: 26  KLVMARLKPNQDLTESVEALCRQHGMDKAIVRGAIGSLIDAHLQYATPTGLREMEVNGPG 85

Query: 238 TEILIRAGEV--RQGRAR---LEIGLINPQGQVCEGVLARGCNPVLICFELVLQE 287
            EIL   GE+    G A    L+  + + +G++  G   RG N   I  E+ LQE
Sbjct: 86  VEILNVFGEIGFADGPASAHPLQGVVADTEGRIFAGRFVRGANLSFITIEITLQE 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,020,805
Number of extensions: 46076
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 3
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)