BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0120.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311794|ref|YP_003775886.1| TetR family transcription regul...   350   4e-98

>gi|300311794|ref|YP_003775886.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  350 bits (898), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60
           MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD
Sbjct: 66  MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 125

Query: 61  IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120
           IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG
Sbjct: 126 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 185

Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITLPSLMDT 174
           EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITLPSLMDT
Sbjct: 186 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITLPSLMDT 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 510,315
Number of extensions: 19610
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)