BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0107.p (423 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311805|ref|YP_003775897.1| two component hybrid sensor his... 671 0.0 gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine... 248 7e-67 gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine k... 246 2e-66 gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine... 223 2e-59 gi|300313027|ref|YP_003777119.1| two component transmembrane sen... 82 8e-17 >gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/332 (100%), Positives = 332/332 (100%) Query: 1 MDDLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIINTAINARDAMPSGGRLTVQIDN 60 MDDLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIINTAINARDAMPSGGRLTVQIDN Sbjct: 805 MDDLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIINTAINARDAMPSGGRLTVQIDN 864 Query: 61 VRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSMA 120 VRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSMA Sbjct: 865 VRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSMA 924 Query: 121 YGFVKQSKGHISIHSEQGKGTTIRIYFPRCLDEEVRIDEVRDLTVHGGDETILVVEDDPN 180 YGFVKQSKGHISIHSEQGKGTTIRIYFPRCLDEEVRIDEVRDLTVHGGDETILVVEDDPN Sbjct: 925 YGFVKQSKGHISIHSEQGKGTTIRIYFPRCLDEEVRIDEVRDLTVHGGDETILVVEDDPN 984 Query: 181 LQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQQARLL 240 LQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQQARLL Sbjct: 985 LQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQQARLL 1044 Query: 241 VPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSQRAHRVELAQVT 300 VPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSQRAHRVELAQVT Sbjct: 1045 VPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSQRAHRVELAQVT 1104 Query: 301 RERDQAAASATIHVLPRTEREPVAQADPLVRE 332 RERDQAAASATIHVLPRTEREPVAQADPLVRE Sbjct: 1105 RERDQAAASATIHVLPRTEREPVAQADPLVRE 1136 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 5/114 (4%) Query: 168 GDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGS 227 G +LVVED+ + Q V + L +LG++ +GE AL+ L+ D++FTDV +PG Sbjct: 1162 GGLRLLVVEDNIDSQQLVCELLETLGHQARGVISGEEALQALEEQ-GFDVLFTDVNLPGM 1220 Query: 228 VPVTELAQQARLLVPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQ 281 V ELA+ A PD+ ++F SGY T+V + L KPY I+QL + Sbjct: 1221 SGV-ELAKAALGRFPDLAVIFASGY--GTMVARN-VGFAAHALPKPYDIDQLQE 1270 >gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine kinase response regulator protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 248 bits (633), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 127/293 (43%), Positives = 193/293 (65%), Gaps = 5/293 (1%) Query: 1 MDDLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIINTAINARDAMPSGGRLTVQIDN 60 M +L+ R+VG I + T A LW+T +D Q+EN ++N INARDAMP GGRLT++ N Sbjct: 391 MHELIGRSVGPAIAVETIAAGGLWHTFVDIGQMENALLNLCINARDAMPHGGRLTIETAN 450 Query: 61 VRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSMA 120 L+D L Q + PG+YV L +SD GAGMSPEV RAF+PFFTTK G+GTGLGLSM Sbjct: 451 RWLDDIGAL-QRGVPPGQYVSLSVSDTGAGMSPEVVARAFDPFFTTKPTGQGTGLGLSMV 509 Query: 121 YGFVKQSKGHISIHSEQGKGTTIRIYFPRCLDE----EVRIDEVRDLTVHGGDETILVVE 176 YGF QS G + I+SE G+G + IY PR + E ++ + E + G +TILVV+ Sbjct: 510 YGFAGQSGGTVRIYSELGQGAMVCIYLPRHVGEGGVDDLALPEESHVPAAPGSKTILVVD 569 Query: 177 DDPNLQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQQ 236 D+P +++ ++ L LGY VL+A++G AL ++++ IDL+ TDV +P + +LA Sbjct: 570 DEPLVRMVTVEVLRDLGYSVLEAEDGPSALRVVEACQEIDLLLTDVGLPNGMNGRQLADA 629 Query: 237 ARLLVPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSQ 289 R PD+ +LF +GY + +++ G L+ G+++L+KP+ + LA+R+++++ + Sbjct: 630 IRAPRPDLPVLFVTGYAENAVLNHGHLERGMQVLTKPFAADVLARRVKELVGE 682 >gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 845 Score = 246 bits (629), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 191/294 (64%), Gaps = 5/294 (1%) Query: 1 MDDLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIINTAINARDAMPSGGRLTVQIDN 60 M++L+RR +G I + A LW T +D Q+E+ ++N INARDAMP GGRLT++ N Sbjct: 549 MEELIRRTIGPAIVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETAN 608 Query: 61 VRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSMA 120 L+D + + DL PG+YV + ++D+G GM P+V RAF+PFFTTK G GTGLGLSM Sbjct: 609 KWLDDR-WAHERDLPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSMV 667 Query: 121 YGFVKQSKGHISIHSEQGKGTTIRIYFPRCL---DEEVRIDEVRDLTVHGGD-ETILVVE 176 YGF +QS G + ++SE G+GTT+ IY PR DE+ D + + G+ E +LVV+ Sbjct: 668 YGFARQSGGQVRLYSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVD 727 Query: 177 DDPNLQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQQ 236 D+ ++++ V + LS GY VL+A++G AL ILQS IDL+ TDV +PG + ++A Sbjct: 728 DEASIRMLVAEILSDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVADA 787 Query: 237 ARLLVPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSQR 290 R PD+ +LF +GY + G L+ G++L++KP+++ LA+R++ +L R Sbjct: 788 GRAARPDLHVLFITGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSILESR 841 >gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 552 Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/286 (43%), Positives = 179/286 (62%), Gaps = 2/286 (0%) Query: 3 DLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIINTAINARDAMPSGGRLTVQIDNVR 62 DL+ R +G +I + T +A LWN LDP Q+E ++N INARDAM GR+ ++ N Sbjct: 261 DLVSRTLGGDITVQTELARGLWNCRLDPTQMEVALLNVLINARDAMNGRGRVRIRTANED 320 Query: 63 LEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSMAYG 122 L DP Q L G YV + ++D+G G++P++ R +PFFTTK EG+GTGLGLSM YG Sbjct: 321 LADPDRAVQLGLKEGLYVSIAVTDDGPGIAPDILPRVMDPFFTTKDEGKGTGLGLSMVYG 380 Query: 123 FVKQSKGHISIHSEQGKGTTIRIYFPRCLDEEVRIDEVRDLT-VHGGDETILVVEDDPNL 181 FVKQS G + I S GTT+ IYFP D+ E + + GG E ILVV+D + Sbjct: 381 FVKQSGGSVRITSGAEGGTTVTIYFPATQDQVGGGFEYDNRSQSQGGQEHILVVDDRLEV 440 Query: 182 QLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQQARLLV 241 L SLGYRV ++ AL++++SG +DL+FTD++MPGS+ LA++A+ ++ Sbjct: 441 AELAQTMLESLGYRVSMVNSPAEALQLIRSGRPVDLLFTDLIMPGSMNGVVLAREAKRML 500 Query: 242 PDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQML 287 P I++L T+GY +++ G D +L KPYR ++LA++IR +L Sbjct: 501 PTIKVLLTTGYASESLERHG-ADGEFPVLDKPYRHDELARKIRIVL 545 >gi|300313027|ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 454 Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 15/118 (12%) Query: 31 NQVENLIINTAINARDAMPSGGRLTVQIDNVRLEDPVFLSQADLAPGEYVELQISDNGAG 90 +++ + +N +NA A+ G TV I R G+ V + ISD G G Sbjct: 332 SELNQVFMNLLVNAAQAISERG--TVTICTAR-------------AGDKVSVSISDTGHG 376 Query: 91 MSPEVRDRAFEPFFTTKLEGEGTGLGLSMAYGFVKQSKGHISIHSEQGKGTTIRIYFP 148 ++PE +R FEPFFTTK G GTGLGLS++YG VK+ G I + S G GTT I P Sbjct: 377 IAPENLNRIFEPFFTTKPVGSGTGLGLSLSYGIVKKHGGDIRVSSAPGCGTTFTIELP 434 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,125,119 Number of extensions: 41967 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 12 Length of query: 423 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 335 Effective length of database: 1,203,190 Effective search space: 403068650 Effective search space used: 403068650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)