BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0103.p (379 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 566 e-162 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 125 7e-30 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 115 8e-27 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 113 2e-26 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 113 3e-26 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 566 bits (1458), Expect = e-162, Method: Compositional matrix adjust. Identities = 284/289 (98%), Positives = 285/289 (98%) Query: 91 LRIIEALRAGVADVLPKTSDYLDHLPEAVARVLEAQRAARRQADSVTRLKDEFLATLSHE 150 +RIIEALRAGVADVLPKTSDYLDHLPEAVARVLE QRAARRQADSVTRLKDEFLATLSHE Sbjct: 1 MRIIEALRAGVADVLPKTSDYLDHLPEAVARVLETQRAARRQADSVTRLKDEFLATLSHE 60 Query: 151 LRTPLNAIVGWTQYLLNDHSDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLE 210 LRTPLNAIVGWTQYLLNDHSDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLE Sbjct: 61 LRTPLNAIVGWTQYLLNDHSDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLE 120 Query: 211 TRPMDLASVAEEAIAAVRPAAEARQIELHPALGQGGVILGDPARLQQVVWNLLMNAIKFT 270 TRPMDLASVAEEAIAAVRPAAEARQIELHPALGQGGVILGDPARLQQVVWNLLMNAIKFT Sbjct: 121 TRPMDLASVAEEAIAAVRPAAEARQIELHPALGQGGVILGDPARLQQVVWNLLMNAIKFT 180 Query: 271 PRQGRVSLSLRQRDDTVALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLG 330 PRQGRVSLSLRQ DDTVALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLG Sbjct: 181 PRQGRVSLSLRQHDDTVALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLG 240 Query: 331 LAIARHLVELHGGQIRAASAGPGMGAAFTVTLPLAATGSGASAGETPPA 379 LAIARHLVELHGGQIRAASAGPGMGAAFTVTLPLAA GSGASA ETPPA Sbjct: 241 LAIARHLVELHGGQIRAASAGPGMGAAFTVTLPLAAAGSGASASETPPA 289 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 125 bits (313), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 96/276 (34%), Positives = 142/276 (51%), Gaps = 43/276 (15%) Query: 122 VLEAQRAARRQADSV--TRLKDE----------FLATLSHELRTPLNAIVGWTQYLLN-- 167 VL ++ RR+ D++ TRLK+E FLA +SHE+RTP+N I+G ++ L+ Sbjct: 318 VLTWRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESG 377 Query: 168 ------DHSDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAE 221 D++D+ G V +++ D+LD S++ +GKL LE + + Sbjct: 378 LSSKQRDYADSIHGATGGLV---------RIINDILDFSKIESGKLDLEMVAFHPVRLVQ 428 Query: 222 EAIAAVRPAAEAR--QIELHPALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRVSLS 279 E RP+ + + Q +LH + ++GDPARL+QV+ NLL NAIKFT + G V LS Sbjct: 429 ELSDLYRPSLQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFT-QAGHVQLS 487 Query: 280 LRQRDDT-------VALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLA 332 + R D + ++D G GI E L +F F Q D S G GLGLA Sbjct: 488 MSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQAD---SSISRRFGGTGLGLA 544 Query: 333 IARHLVELHGGQIRAAS-AGPGMGAAFTVTLPLAAT 367 I+++LVEL GG I S G +F + P A+T Sbjct: 545 ISKNLVELMGGTIACQSIPGESTRFSFEILCPEAST 580 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 135/268 (50%), Gaps = 14/268 (5%) Query: 120 ARVLEAQRAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSDADRLVKGL 179 AR E A+ AD + FL+T+SHE+RTP+NA++G L + D + + Sbjct: 67 ARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQ-AEFA 125 Query: 180 QVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEARQIELH 239 + IE +A +V D+LD S++ GK+ + DLA V E + A+ A +++ L Sbjct: 126 KAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKRVRLL 185 Query: 240 PALGQ--GGVILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQRDDT-----VALEVS 292 L ++GDP R++Q++ NLL NA+KFT G V L ++ T V EV Sbjct: 186 AHLDSRLPPRLVGDPGRIRQILLNLLGNALKFT-HAGEVLLRVQALQVTSDHCRVRFEVR 244 Query: 293 DNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASA-G 351 D+G G+ + L +F F Q D S G GLGL+I + LVEL GG I SA G Sbjct: 245 DSGIGMDEDTLRRLFSPFAQAD---SSVTRQYGGTGLGLSICKRLVELMGGSIGVESALG 301 Query: 352 PGMGAAFTVTLPLAATGSGASAGETPPA 379 G F + +P+ TG G E P A Sbjct: 302 TGSCFWFELGIPV-TTGPGMIRSEPPAA 328 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 124/234 (52%), Gaps = 14/234 (5%) Query: 137 TRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSD--ADRLVKGLQVIERNARLQAQMVE 194 + K EFLA +SHELRTPLN+ + + L ++ +D V+ Q I ++ Sbjct: 472 NQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALIN 531 Query: 195 DLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEAR----QIELHPALGQGGVILG 250 D+LD+S+M AGKL + L +A+E A+ A+ + ++E+ P + Q + Sbjct: 532 DILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEVEPGVPQR--MET 589 Query: 251 DPARLQQVVWNLLMNAIKFTPRQGRVSLSLR-QRDDTVALEVSDNGRGIKGEFLGSVFDR 309 D RL Q++ NLL NAIKFT + G VSL + +A V D G GI + +F+ Sbjct: 590 DIQRLGQILKNLLSNAIKFTEK-GEVSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIFEA 648 Query: 310 FTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMGAAFTVTLP 363 F Q D GST G GLGL+I+R L L GG IR S G G+ FT++LP Sbjct: 649 FRQAD---GSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSR-LGEGSIFTLSLP 698 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 12/245 (4%) Query: 124 EAQRAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSDADRLVKGLQVIE 183 E QRA + A+S K F+A +SHELRTPLN+I+G+ Q L D + + VI Sbjct: 673 ELQRA-KEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKDAIGVIR 731 Query: 184 RNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEARQIELHPALG 243 R+ +++ LLD++++ AGK+RL + + L + E+ + P AE Q LH Sbjct: 732 RSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAE--QKGLHFRFD 789 Query: 244 QGG----VILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQRDDTVALEVSDNGRGIK 299 + G ++ D RL+Q++ NLL NA+KFT G V+L LR + +V D G GI Sbjct: 790 KSGRLPQIVHADQKRLRQILINLLGNAVKFT-DHGGVTLRLRYAREIAYFDVIDTGIGIA 848 Query: 300 GEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAAS-AGPGMGAAF 358 + +F F + S+ + G GLGLAI+R LV + GG++ S G G Sbjct: 849 DDDRERIFLPFER---SSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHL 905 Query: 359 TVTLP 363 + LP Sbjct: 906 KIYLP 910 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,015,854 Number of extensions: 36959 Number of successful extensions: 384 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 329 Number of HSP's successfully gapped: 45 Length of query: 379 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 292 Effective length of database: 1,207,925 Effective search space: 352714100 Effective search space used: 352714100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)