BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0102.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311809|ref|YP_003775901.1| two component response regulato...   311   2e-86
gi|300311884|ref|YP_003775976.1| two component response regulato...    59   2e-10
gi|300312037|ref|YP_003776129.1| sensory transduction regulatory...    55   4e-09
gi|300312677|ref|YP_003776769.1| two component hybrid sensor his...    54   5e-09

>gi|300311809|ref|YP_003775901.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  311 bits (796), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ 60
           MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ
Sbjct: 1   MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ 60

Query: 61  LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV 120
           LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV
Sbjct: 61  LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV 120

Query: 121 EYEDFIEAIRRLGFFLQVVKLPGLAAAQKGPEQP 154
           EYEDFIEAIRRLGFFLQVVKLPGLAAAQKGPEQP
Sbjct: 121 EYEDFIEAIRRLGFFLQVVKLPGLAAAQKGPEQP 154


>gi|300311884|ref|YP_003775976.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score = 58.5 bits (140), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 1/140 (0%)

Query: 5   QSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRS-RTELQQLVV 63
           +  +IILV+D    A L    L    L +      D + A ++ F  + + R +L   ++
Sbjct: 4   EQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLI 63

Query: 64  LLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEYE 123
           LLD+N+P ++G + L+ +K++   S IPV+M +++DD R+I + YE G N Y+ K  + +
Sbjct: 64  LLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPK 123

Query: 124 DFIEAIRRLGFFLQVVKLPG 143
           +F+  +   G + +    P 
Sbjct: 124 EFMGTVVDTGIYWRNRNRPA 143


>gi|300312037|ref|YP_003776129.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 8   NIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQ-RSRTELQQLVVLLD 66
           +I++V+       L    L R  L   F    D + A   LF+PQ R+       ++LL+
Sbjct: 5   SILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLE 64

Query: 67  VNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEYEDFI 126
             +PR+ G+E+L  L+A     A+PV+M  T+ D  +  R    G N Y+ KPV+   F+
Sbjct: 65  PRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFM 124

Query: 127 EAI 129
           E +
Sbjct: 125 ELV 127


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor
            histidine kinase/response regulator protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score = 54.3 bits (129), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 9    IILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQLV--VLLD 66
            I++VEDD  +   +   L   G+     R  +G+EAL  L   QRS+ +    +  VL+D
Sbjct: 1037 ILVVEDDVRNIFALSSVLEPKGMKVEIAR--NGREALQAL---QRSQDKPDAPIDLVLMD 1091

Query: 67   VNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEYEDFI 126
            + MP ++G+  +R ++   V   +P+I LT      +  +C   G N YI KP++ E  +
Sbjct: 1092 IMMPEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLL 1151

Query: 127  EAIR 130
              +R
Sbjct: 1152 SLVR 1155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 459,136
Number of extensions: 17337
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 5
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)