BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0091.p
         (550 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirill...  1011   0.0  

>gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 529

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/506 (98%), Positives = 498/506 (98%)

Query: 1   VITALAVSLRKAGIDASILLPAYPEAVRNLGHTEQIGLKHGLPGGAGRLLRGIIPGTDVP 60
           VITALAVSLRKAGIDASILLPAYPEAVRNLGHTEQIGLKHGLPGGAGRLLRGIIPGTDVP
Sbjct: 24  VITALAVSLRKAGIDASILLPAYPEAVRNLGHTEQIGLKHGLPGGAGRLLRGIIPGTDVP 83

Query: 61  ALLLDTARFRQRGANPYLDTDGVEFSDNAVCFADLSHAAVAICAGETSLPAPHVVHANDW 120
           ALLLDTARFRQRGANPYLDTDGVEFSDNAVCFADLSHAAVAICAGETSL APHVVHANDW
Sbjct: 84  ALLLDTARFRQRGANPYLDTDGVEFSDNAVCFADLSHAAVAICAGETSLSAPHVVHANDW 143

Query: 121 HAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSF 180
           HAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSF
Sbjct: 144 HAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSF 203

Query: 181 LKAGIRFSDCVSTVSRNYAHEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDP 240
           LKAGIRFSDCVSTVSRNYAHEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDP
Sbjct: 204 LKAGIRFSDCVSTVSRNYAHEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDP 263

Query: 241 LIARNFSVGNMKGKAACKRDLQKLFGLPVDPFAPVMGMGSRLSHQKMADVVIEALPGIME 300
           LIARNFSVGNMKGKAACKRDLQKLFGLPVDPFAPVMGMGSRLSHQKMADVVIEALPGIME
Sbjct: 264 LIARNFSVGNMKGKAACKRDLQKLFGLPVDPFAPVMGMGSRLSHQKMADVVIEALPGIME 323

Query: 301 RHPRMQMVVLGCGDHDYEKSLLALAQRYAGRIAVHIGYDERRAHALHAGSDMLLHPTRFE 360
           RHPRMQMVVLGCGDHDYEKSLLALAQRYAGRIAVHIGYDERRAHALHAGSDMLLHPTRFE
Sbjct: 324 RHPRMQMVVLGCGDHDYEKSLLALAQRYAGRIAVHIGYDERRAHALHAGSDMLLHPTRFE 383

Query: 361 PFGLTPLYAMRYGAIPIGSRVGGLVDTVCDADLDAERATGVLFDGDRASDMEAAVDRAFA 420
           PFGLTPLYAMRYGAIPIGSRVGGLVDTVCDADLDAERATGVLFDGDRASDMEAAVDRAFA
Sbjct: 384 PFGLTPLYAMRYGAIPIGSRVGGLVDTVCDADLDAERATGVLFDGDRASDMEAAVDRAFA 443

Query: 421 LYADNERWQSMQRNAMSIDCDWAGPTRAYIDAYADVADMAVRPLFAPRPVPVERPAVQHE 480
           LYADNERWQSMQRNAMSIDCDWAGPTRAYIDAYA VADMAVRPLFAPRP PVERPAVQHE
Sbjct: 444 LYADNERWQSMQRNAMSIDCDWAGPTRAYIDAYAHVADMAVRPLFAPRPQPVERPAVQHE 503

Query: 481 RMVSPAAAIAAALAGVVGVPGACSRA 506
           RMV PAAAIAAALA VVGVP A + A
Sbjct: 504 RMVRPAAAIAAALASVVGVPAAVAAA 529


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,668,972
Number of extensions: 71497
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 460
Effective length of database: 1,193,720
Effective search space: 549111200
Effective search space used: 549111200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)