BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0081.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311828|ref|YP_003775920.1| XRE family transcription regula...   273   3e-75
gi|300313881|ref|YP_003777973.1| transcription regulator protein...   144   2e-36

>gi|300311828|ref|YP_003775920.1| XRE family transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 133

 Score =  273 bits (699), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MKCPCCGAAELVHETRDLPYTYKGESTLIAQVKGDFCPACGEVLLDREHGDRYSELIGQF 60
           MKCPCCGAAELVHETRDLPYTYKGESTLIAQVKGDFCPACGEVLLDREHGDRYSELIGQF
Sbjct: 1   MKCPCCGAAELVHETRDLPYTYKGESTLIAQVKGDFCPACGEVLLDREHGDRYSELIGQF 60

Query: 61  QRKVNAAYVDPAYIARVRRKLDLDQREAGELFGGGVNAFSRYENGKTKPPLSLVKLFRLL 120
           QRKVNAAYVDPAYIARVRRKLDLDQREAGELFGGGVNAFSRYENGKTKPPLSLVKLFRLL
Sbjct: 61  QRKVNAAYVDPAYIARVRRKLDLDQREAGELFGGGVNAFSRYENGKTKPPLSLVKLFRLL 120

Query: 121 DRHPDLLDEIRAA 133
           DRHPDLLDEIRAA
Sbjct: 121 DRHPDLLDEIRAA 133


>gi|300313881|ref|YP_003777973.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 160

 Score =  144 bits (363), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 91/132 (68%)

Query: 1   MKCPCCGAAELVHETRDLPYTYKGESTLIAQVKGDFCPACGEVLLDREHGDRYSELIGQF 60
           MKCP CG A L+ +TRDLPY YKGE+T+IA V GD+CP CGE L   E   R S     F
Sbjct: 1   MKCPHCGGAHLIRDTRDLPYAYKGETTVIATVTGDYCPRCGECLPTIEEEARISAEALAF 60

Query: 61  QRKVNAAYVDPAYIARVRRKLDLDQREAGELFGGGVNAFSRYENGKTKPPLSLVKLFRLL 120
            +++NA  +DPA I   R  L L QREA  LFGGG+NAF+RYE GK +PP +LV L RLL
Sbjct: 61  NKEINAGMIDPAEIISTREALQLGQREASLLFGGGINAFNRYEAGKIQPPRALVLLLRLL 120

Query: 121 DRHPDLLDEIRA 132
            +HP+LL E+RA
Sbjct: 121 RKHPELLSELRA 132


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 419,006
Number of extensions: 16385
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)