BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0077.p
         (440 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311833|ref|YP_003775925.1| hypothetical protein Hsero_2518...   907   0.0  

>gi|300311833|ref|YP_003775925.1| hypothetical protein Hsero_2518
           [Herbaspirillum seropedicae SmR1]
          Length = 440

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/440 (99%), Positives = 439/440 (99%)

Query: 1   MNNNHKPTTDTAAPTLKRRGFLGGLLAAAAGGALATIATPGQAAARAEVALDRAKWAARN 60
           MNNNHKPTTDTAAPTLKRRGFLGGLLAAAAGGALATIATPGQAAARAEVALDRAKWAARN
Sbjct: 1   MNNNHKPTTDTAAPTLKRRGFLGGLLAAAAGGALATIATPGQAAARAEVALDRAKWAARN 60

Query: 61  HEMVAQMIAEHGKLAAGYQSSKRPYAVFDWDNTSIMNDCEEALLMHQINTLSFKLTPAEF 120
           HEMVAQMIAEHGKLAAGYQSSKRPYAVFDWDNTSIMNDCEEALLMHQINTLSFKLTPAEF
Sbjct: 61  HEMVAQMIAEHGKLAAGYQSSKRPYAVFDWDNTSIMNDCEEALLMHQINTLSFKLTPAEF 120

Query: 121 SAITRQNVPPGPFSKDFKNAAGQVVDLEAICADLDADYAFLYANYKGMAGSKSLEEVSAT 180
           SAITRQNVPPGPFSKDFKNAAG+VVDLEAICADLDADYAFLYANYKGMAGSKSLEEVSAT
Sbjct: 121 SAITRQNVPPGPFSKDFKNAAGEVVDLEAICADLDADYAFLYANYKGMAGSKSLEEVSAT 180

Query: 181 LEFQDFRAKLYYLYEAVNDTHGVAVGYPWVIYFFANMSVAEVSALAEASNDAALGAALTK 240
            EFQDFRAKLYYLYEAVNDTHGVAVGYPWVIYFFANMSVAEVSALAEASNDAALGAALTK
Sbjct: 181 PEFQDFRAKLYYLYEAVNDTHGVAVGYPWVIYFFANMSVAEVSALAEASNDAALGAALTK 240

Query: 241 VKYTSPAQRPGRAGVVSVSHFHGIRLCTEIATLMDALRRNGIDVYVCTASLEEVVAVFAT 300
           VKYTSPAQRPGRAGVVSVSHFHGIRLCTEIATLMDALRRNGIDVYVCTASLEEVVAVFAT
Sbjct: 241 VKYTSPAQRPGRAGVVSVSHFHGIRLCTEIATLMDALRRNGIDVYVCTASLEEVVAVFAT 300

Query: 301 HPKYGYHVSRDNIIGLRLERNGQVLRNAYLKDWPLTWGPGKTVAIRQVLVAQKGYGPLFV 360
           HPKYGYHVSRDNIIGLRLERNGQVLRNAYLKDWPLTWGPGKTVAIRQVLVAQKGYGPLFV
Sbjct: 301 HPKYGYHVSRDNIIGLRLERNGQVLRNAYLKDWPLTWGPGKTVAIRQVLVAQKGYGPLFV 360

Query: 361 AGDSDGDYDMLRDFPETRYGFIVNRMKNGKIGELSKLAAEQINAGRPRFLLQGRQESTGN 420
           AGDSDGDYDMLRDFPETRYGFIVNRMKNGKIGELSKLAAEQINAGRPRFLLQGRQESTGN
Sbjct: 361 AGDSDGDYDMLRDFPETRYGFIVNRMKNGKIGELSKLAAEQINAGRPRFLLQGRQESTGN 420

Query: 421 WLPAEASIKYGKTAPQLLTS 440
           WLPAEASIKYGKTAPQLLTS
Sbjct: 421 WLPAEASIKYGKTAPQLLTS 440


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,250,942
Number of extensions: 47071
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,203,190
Effective search space: 423522880
Effective search space used: 423522880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)