BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0075.p (332 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 681 0.0 gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 141 9e-35 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 114 1e-26 gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 113 2e-26 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 102 3e-23 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/332 (100%), Positives = 332/332 (100%) Query: 1 MSSCLLSQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSD 60 MSSCLLSQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSD Sbjct: 1 MSSCLLSQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSD 60 Query: 61 GLQIFREASSRAVRQSCQVWPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVT 120 GLQIFREASSRAVRQSCQVWPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVT Sbjct: 61 GLQIFREASSRAVRQSCQVWPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVT 120 Query: 121 PDAHEIYGIVVQRDALQASAARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAG 180 PDAHEIYGIVVQRDALQASAARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAG Sbjct: 121 PDAHEIYGIVVQRDALQASAARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAG 180 Query: 181 QASGAHAALQLRQEAVLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVT 240 QASGAHAALQLRQEAVLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVT Sbjct: 181 QASGAHAALQLRQEAVLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVT 240 Query: 241 VPMLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAA 300 VPMLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAA Sbjct: 241 VPMLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAA 300 Query: 301 AWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 332 AWGFANFSQFSCDYKKLFGQTPSAMLQARTRH Sbjct: 301 AWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 332 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 141 bits (355), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 16/310 (5%) Query: 27 DVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYWF 86 DVDE A LT WEQ Y Q+ G F+G L Q++ RE ++ A+ + P Sbjct: 15 DVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMVPPPGQMVI 74 Query: 87 GI-EARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQASAARLGC 145 GI + G +NGR +G+D ++ G+ + T E+ GI +QRD ++L Sbjct: 75 GICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLF---LSQLHE 131 Query: 146 QPD-----WQRLGQAELLKVDHGGLEDCRQQIAALLAMAGQASGAHAALQLRQEAVL--V 198 Q D W L +L G L LL A + + + V+ V Sbjct: 132 QDDASVRKWLDLSVLQLDPATAGMLRHYFSLAFDLLNTAQGKTVHPISPRALASTVISNV 191 Query: 199 ALLAMLDEGEIEAEAG-ASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRTLQY 257 AL L+ G + E+ S RR RIV +A ++ AH + + +C A HVSRRTLQY Sbjct: 192 ALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCRATHVSRRTLQY 251 Query: 258 CFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAV----GSIGDIAAAWGFANFSQFSCD 313 CFE+ L +SP+ YL++LRLN R + G +IG++AA GF + S+F+ + Sbjct: 252 CFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALCGFNHPSRFASE 311 Query: 314 YKKLFGQTPS 323 YKK+FG PS Sbjct: 312 YKKMFGVLPS 321 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 9/308 (2%) Query: 26 RDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYW 85 +DV EHA ++ W Y QI+ G E L + + +FRE ++ V Q + + Sbjct: 9 QDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQGEAPREQVC 68 Query: 86 FGIEARTTGM-RINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQASAARLG 144 F G + GR+V E ++ G EF P +++ I R +A Sbjct: 69 FAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALFEAQLEHTA 128 Query: 145 CQPDWQRLGQAELLKVDHGGLEDCRQQIAALL--AMAGQASGAHAALQLRQEAVLVALLA 202 L + ++KV L CR+++ + AM G H ++ + ++LLA Sbjct: 129 SPERIVALMKQPVVKVASQDLHACRERLLNIFYWAMLSIEDG-HGQHPQHEQELELSLLA 187 Query: 203 MLDEGEIEAEAGAS---FLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRTLQYCF 259 L + GAS R IV+ M + ++ +CE + VSRRT+Q F Sbjct: 188 ELLALLSAPDCGASRQISTIRSYIVDKLHRQTMNDAINVPSIFEVCEQMQVSRRTVQNSF 247 Query: 260 EDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAAAWGFANFSQFSCDYKKLFG 319 + V +P +YLR +RLNGVRRAL Q +IGDIA+ WGF + S F+ DY+ LF Sbjct: 248 QTVTETTPRNYLRCVRLNGVRRALMSTSAEQI--TIGDIASRWGFFHLSHFAEDYRALFC 305 Query: 320 QTPSAMLQ 327 + PS ++ Sbjct: 306 ELPSQTIR 313 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 20/313 (6%) Query: 26 RDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYW 85 +DV HA + W+Q Y QI+ G E L + + FRE ++ V Q + D Sbjct: 9 QDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEAPRDQIC 68 Query: 86 FGIEARTTGM-RINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQASAARLG 144 F G + GR+ + ++ G EF P ++ + RD + ++ Sbjct: 69 FAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEEHLHQM- 127 Query: 145 CQPDWQRLG---QAELLKVDHGGLEDCRQQIAALLAMA------GQASGAHAALQLRQEA 195 PD R+ + ++KV GL CR+++ L + A G ++Q Q Sbjct: 128 --PDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQTLQRE 185 Query: 196 VLVALLAMLDEGEIEAEAGASFLR-----RRRIVNDAREFAMAHQDSPVTVPMLCEAVHV 250 + + + + +R R IV + + ++ +C+ + V Sbjct: 186 QALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVCQRLQV 245 Query: 251 SRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAAAWGFANFSQF 310 SRRT+Q F+ V +P++YLR +RLNGVRR L ++A SIGDIA+ WGF + S F Sbjct: 246 SRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEA--SIGDIASRWGFFHLSHF 303 Query: 311 SCDYKKLFGQTPS 323 + DY+ LFG+ PS Sbjct: 304 AEDYQALFGELPS 316 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 102/340 (30%), Positives = 151/340 (44%), Gaps = 30/340 (8%) Query: 7 SQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFR 66 +QP A P+ T + +DE +L + Q++ G L Q +QI+R Sbjct: 9 AQPQYFAAPLPVGSFTVYS--LDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLGHIQIYR 66 Query: 67 EASSRAVRQSCQVWPDA--YWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAH 124 E S + + + WP + + F ++AR G ++GR V + G E++TP Sbjct: 67 ERSDKPLLKRGVNWPGSLVFSFVVQARGRGW-LSGRAVDPQASLVADGEALPEIITPAEL 125 Query: 125 EIYGIVVQRDALQASAARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAGQA-- 182 ++ IVV R L + R+G Q G A L+ E + GQA Sbjct: 126 DLVFIVVDRQWL---SERIGDGASRQIAGSARDLRCFAAWHEHALVLRRLFPLLPGQARL 182 Query: 183 -----SGAHAALQLRQEA---------VLVALLAMLDEGEIEAEAGASFLRRRRIVNDAR 228 S H AL R A VL ALL +L G + +R+++ AR Sbjct: 183 GQPSPSIGHCALAPRSSAGGGSLAEDMVLEALLDVL--GSVHRVEALRETDHKRLIDQAR 240 Query: 229 EFAMAHQDSPVTVPMLCEAVH--VSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHG 286 + D+P M A H VSRR LQ CF +G+ + ++R+ RLN VR+AL Sbjct: 241 R--LMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLNQVRKALVEA 298 Query: 287 DGRQAVGSIGDIAAAWGFANFSQFSCDYKKLFGQTPSAML 326 SIGDIAA WGF + S+F+ DY+ +FG+ PS L Sbjct: 299 RRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTL 338 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 989,878 Number of extensions: 37930 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 6 Length of query: 332 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 246 Effective length of database: 1,212,660 Effective search space: 298314360 Effective search space used: 298314360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)