BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0071.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   699   0.0  
gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   238   7e-64

>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MQRYTRRTFTSLMIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHA 60
           MQRYTRRTFTSLMIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHA
Sbjct: 1   MQRYTRRTFTSLMIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHA 60

Query: 61  KAMGLGEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGA 120
           KAMGLGEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGA
Sbjct: 61  KAMGLGEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGA 120

Query: 121 LSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPL 180
           LSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPL
Sbjct: 121 LSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPL 180

Query: 181 TVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFAL 240
           TVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFAL
Sbjct: 181 TVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFAL 240

Query: 241 KSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEF 300
           KSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEF
Sbjct: 241 KSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEF 300

Query: 301 TSTPVDIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS 341
           TSTPVDIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS
Sbjct: 301 TSTPVDIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS 341


>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  238 bits (606), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 125/307 (40%), Positives = 194/307 (63%), Gaps = 6/307 (1%)

Query: 27  AHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGLGEVKTKWVLLDGGNVINDAML 86
           A AE Q +RI+  +G++YL L V +DQ L+EKH KA G+ ++K +W+ L GG+ INDA+L
Sbjct: 30  ARAEGQ-LRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGV-DIKVEWLKLSGGSAINDALL 87

Query: 87  AGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDK 146
           +G++DIAG G    +T+W + +G  R  V G  +L   P +L +NNP VK++ DF+ KD+
Sbjct: 88  SGSVDIAGAGVGPLLTIWDRTYG--RQNVRGAASLGNFPYYLVSNNPKVKTIADFSDKDR 145

Query: 147 IAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVSLSHPEAMASLVSGKTEITAHFTS 206
           IA+P +  S+ + +LQ+A+AK +G   Y +LD +++++ HP+A A+++SG TEIT HF +
Sbjct: 146 IALPAVGVSVQSRVLQLASAKLWGDAQYNRLDKISIAVPHPDATAAIISGGTEITGHFGN 205

Query: 207 PPFSYQE-AKAPGITRVLNSTDVLGH-ITIDVVFALKSFTDKNPKLTQAFMAAQEEANAY 264
           PPF  QE A  P    VL S DVLG   +  V++A + F   NPK  +AF+ A EE  ++
Sbjct: 206 PPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYATEKFRKDNPKTYRAFLDALEETASF 265

Query: 265 IAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFTSTPVDIMQYVVFMSKAGTIKTKP 324
           I  N   AA+I+L+V+K    ++ + Q++ +P  +F   P +      FM + G IK KP
Sbjct: 266 IRANPDKAADIYLKVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKP 325

Query: 325 AVWHEMF 331
           A   + F
Sbjct: 326 ASVKDYF 332


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,033,262
Number of extensions: 41752
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)