BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0068.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 480 e-137 gi|300309981|ref|YP_003774073.1| two component response regulato... 176 1e-45 gi|300313818|ref|YP_003777910.1| two component transcription reg... 172 3e-44 gi|300313680|ref|YP_003777772.1| two component response regulato... 170 1e-43 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 168 5e-43 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 480 bits (1235), Expect = e-137, Method: Compositional matrix adjust. Identities = 237/239 (99%), Positives = 238/239 (99%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLSESYDLLILDVMLPQQDGFS 60 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHA+RRLSESYDLLILDVMLPQQDGFS Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESYDLLILDVMLPQQDGFS 60 Query: 61 LLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGG 120 LLQQLRTRG HTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGG Sbjct: 61 LLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGG 120 Query: 121 ESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV 180 ESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV Sbjct: 121 ESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV 180 Query: 181 DDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGTAAHTSPLH 239 DDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGTAAHTSPLH Sbjct: 181 DDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGTAAHTSPLH 239 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 176 bits (447), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 135/218 (61%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRILL ED + +A+ + L G+ + NG A+ LS + +DLLILD+ LP+ G Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 +L++LR R PVL+LTA VE+RV+ LDLGADDY+ KPF EL+AR+R L RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++ LS D+ R A + Q +EL+ RE+ LLE++ R GR+ +K++L+D L Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 + S N++E YV RLRKK+ I T+RGLGY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 4/221 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 MRILLVED +++ + + TVE NGA A+ L ++ Y L+ILD+ LP+ DG Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 +L+++R RG TPVL+LTA + +RV L++GADDYL KPF+ EL+AR++ LLRRS Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 + C LS D SR+ T G+ + LT RE +LE + R G K++L ++FT Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 180 VDDNPSANSVEQYVARLRKKL---AAAAFEIRTLRGLGYQL 217 ++DN S +++E Y+ RLRKKL I TLRGLGY L Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLL 221 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 137/216 (63%), Gaps = 3/216 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 MR+LLVED V EA+ L + G ++W +G A+ L +E Y +L+LD+ LPQ+DG Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L+ LR RG PVL+ TA V +RV LD GADDYL+KPFD EL AR+R L RR Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + +L+ + ++ + T+ G+P+ L+ RE TLL+ RPG + ++ +L ++L+ Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGY 215 DD+ +N+VE ++ LRKK+ + I+ +RG+GY Sbjct: 181 WDDSIESNAVEVHIHALRKKVGSDF--IKNVRGVGY 214 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 168 bits (425), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 138/218 (63%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 M++LL+ED +A + L V+ ++G A++ L E+YD+++LD+MLP+ G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L++LR R PV++LTA ++E+V L GADDYLVKPF+ REL ARI+VL+RR Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 + +HC NL D +R + G + L RE +LE++ R G+ +K LM +F+ Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 + + PSA+++E Y++RLRKKL + I TLRGLGY L Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 618,190 Number of extensions: 23366 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 44 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)