BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0067.p (468 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine ... 939 0.0 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 124 1e-29 gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 118 9e-28 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 115 1e-26 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 114 1e-26 >gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 468 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/468 (99%), Positives = 468/468 (100%) Query: 1 MQGRTQHVIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQI 60 MQGRTQHVIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQI Sbjct: 1 MQGRTQHVIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQI 60 Query: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGP 120 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGP Sbjct: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGP 120 Query: 121 LLRDGQYLGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMS 180 LLRDGQYLGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMS Sbjct: 121 LLRDGQYLGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMS 180 Query: 181 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPLVLTVPAETHALVSAINAFMQRLAV 240 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPLVLTVPAETHALVSAINAFMQRLAV Sbjct: 181 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPLVLTVPAETHALVSAINAFMQRLAV 240 Query: 241 HRSTMRRVIGDAAHQLRTPVTALVAQMELLATEDNEEKRQRHLTLLRERTRNLGALVNQL 300 HRSTMRRVIGDAAHQLRTPVTALVAQMELLATEDNEEKRQRHLTLLRERTRNLGALVNQL Sbjct: 241 HRSTMRRVIGDAAHQLRTPVTALVAQMELLATEDNEEKRQRHLTLLRERTRNLGALVNQL 300 Query: 301 INHAMVQHRNDSSLQARIDLGELVRSQMTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISL 360 INHAMVQHRNDSSLQARIDLGELVRSQMTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISL Sbjct: 301 INHAMVQHRNDSSLQARIDLGELVRSQMTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISL 360 Query: 361 GEAIKNILDNALQYGAPGLLQVRLDSDGQRHWLRFIDDGPGIPAADWERLRKPFSPRGEQ 420 GEAIKNILDNALQYGAPGLLQVRL+SDGQRHWLRFIDDGPGIPAADWERLRKPFSPRGEQ Sbjct: 361 GEAIKNILDNALQYGAPGLLQVRLESDGQRHWLRFIDDGPGIPAADWERLRKPFSPRGEQ 420 Query: 421 RMGASLGLSIVEEVMRAHGGELRFAYLPVGHFAVVLDFPAWQAPAEVV 468 RMGASLGLSIVEEVMRAHGGELRFAYLPVGHFAVVLDFPAWQAPAEVV Sbjct: 421 RMGASLGLSIVEEVMRAHGGELRFAYLPVGHFAVVLDFPAWQAPAEVV 468 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/425 (25%), Positives = 193/425 (45%), Gaps = 14/425 (3%) Query: 22 VGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQIAENTWYDHGEVNVDVPLAALS 81 + +LLV+ + W++ A+ A+D+ L S + + ++ A Sbjct: 17 IAPLLLVNLIGAGLTYWLA-WLPAQHAFDQNLMDSTWGLYAQVRHRQERTTAELTQQAEQ 75 Query: 82 MLGTG--DHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGPLLRDGQYLGTPVRMAIIGR 139 +L + D +AV + G+++ GD F P++P ++ P+ DG+ G PVR+A + Sbjct: 76 ILRSNHSDTTFFAVRNTEGQIVVGDKGF-PQLPASDVFDRPINYDGEMRGEPVRIAAMQV 134 Query: 140 RMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMSVLTLVAAMFTLYQALAPLK 199 R V+ W + +A+T R ++ LV+ A++ ++ + + + L PLK Sbjct: 135 R--VKNGVIW--VAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRRGLRPLK 190 Query: 200 RIEAAIRERDLNDLSPLV-LTVPAETHALVSAINAFMQRLAVHRSTMRRVIGDAAHQLRT 258 ++ + +RD L + P E L+ A+N M R+ + + D AHQLRT Sbjct: 191 SLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRT 250 Query: 259 PVTALVAQMELLATEDNEE-KRQRHLTLLRERTRNLGALVNQLINHAMVQ-HRNDSSLQA 316 P+T L Q+ELL + ++ R L ++ + QL+ A + +S Sbjct: 251 PLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLE 310 Query: 317 RIDLGELVRSQMTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISLGEAIKNILDNALQYGA 376 + L +LV + + + DL D+ P +RGD L + I N++DNA++Y Sbjct: 311 ELSLDKLVEESVQHFIEEADKKRIDLGFDLR--PARLRGDRFLLSDLIDNLIDNAVRYSP 368 Query: 377 P-GLLQVRLDSDGQRHWLRFIDDGPGIPAADWERLRKPFSPRGEQRMGASLGLSIVEEVM 435 P G + VR + L D GPGI E + F ++ G+ LGL+IV E+ Sbjct: 369 PHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAIVREIA 428 Query: 436 RAHGG 440 HGG Sbjct: 429 HDHGG 433 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 118 bits (296), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/298 (33%), Positives = 149/298 (50%), Gaps = 10/298 (3%) Query: 152 IVLAQTNNARMSFAQSLGSRALVVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRERDLN 211 + LAQ + R AQ RAL V ++ L L+A + + APL+ + I R + Sbjct: 134 LALAQETDLRQHIAQRSAWRALWPFVVLAPLLLLAVQRIIKRLFAPLQALRQEIDSRGED 193 Query: 212 DLSPLV-LTVPAETHALVSAINAFMQRLAVHRSTMRRVIGDAAHQLRTPVTALVAQMELL 270 DL P+ +P E A V+AIN + R+ + RR + DAAH+LRTP+TAL Q E L Sbjct: 194 DLQPIAERLLPREVQAFVAAINGLLARVEAGMAAQRRFVADAAHELRTPLTALSLQAERL 253 Query: 271 ATEDNEEKRQRHLTLLRERTRNLGALVNQLINHAMVQHRNDSSLQARIDLGELVRSQMTE 330 E + LT L + LV QL+ A Q ++LQ L +++R + E Sbjct: 254 GRAPMSETARERLTRLETGLQRARQLVTQLLALARAQTPAGAALQP-CSLHQVLREVIEE 312 Query: 331 VLSNRSRTPHDLSLDVPPLPCLIRGDAISLGEAIKNILDNALQYG-APGLLQVRLDSDGQ 389 +L DL LD C++ L + ++N++DNA+ Y A G + +R++ Q Sbjct: 313 LLPLAQCKQIDLGLDGERDACVLT-QPQELAQLLRNLIDNAIAYTPAGGAVSLRMERHAQ 371 Query: 390 RHWLRFIDDGPGIPAADWERLRKPF---SPRGEQRMGASLGLSIVEEVMRAHGGELRF 444 L D GPGI A++ ER+ +PF P G+ G+ LGL+IV+ + R G LR Sbjct: 372 WVALEICDTGPGIAASERERVFQPFYRIDPSGQ---GSGLGLAIVQSIARRLGVTLRL 426 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 14/311 (4%) Query: 150 AVIVLAQTNNARMSFAQSLGSRALVVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRERD 209 A + + +T R A + ++ + + L F L + L+PL ++ IR R Sbjct: 53 ATVQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARR 112 Query: 210 LNDLSPL-VLTVPAETHALVSAINAFMQRLAVHRSTMRRVIGDAAHQLRTPVTALVAQME 268 +DLSP+ VP E LV ++N + RL+ + +R I DAAHQ++TP+ + Q E Sbjct: 113 PDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSE 172 Query: 269 LLATEDNEEKRQRHLTLLRERTRNLGALVNQLINHAMVQH-RNDSSLQARIDLGELVRSQ 327 L +D++ +R L L + + LVNQL++ A ++ ++ S ++L EL RS Sbjct: 173 LALRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSV 232 Query: 328 MTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISLGEAIKNILDNALQY---GAPGLLQVRL 384 + + + DL + P P LI G+ + L E + N+LDNAL Y G + VR Sbjct: 233 VQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRA 292 Query: 385 DSD--GQRHWLRFIDDGPGIPAAD----WERLRKPF-SPRGEQRMGASLGLSIVEEVMRA 437 +D G L D+GPGIP A+ +ER + +P +G LGL+IV E+ + Sbjct: 293 RTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLG--LGLAIVREIAQQ 350 Query: 438 HGGELRFAYLP 448 H L P Sbjct: 351 HEAALEITSNP 361 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 113/426 (26%), Positives = 197/426 (46%), Gaps = 19/426 (4%) Query: 50 DRILAGSALQIAENTWYDHGEVNVDVPLAALSMLGT--GDHAIYAVFDPRGRVIAGDAEF 107 DR L SA IA ++ G V VP AAL + + D Y V ++AG +F Sbjct: 41 DRALLASARMIAGQVGWNDGAPVVSVPPAALELFASPAQDAVYYQVLMDDDTLLAGRPDF 100 Query: 108 RPEIPWQELEQGPLLRDGQYLGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQ- 166 + L P+ + G P+R+ R + EG + + QT R Sbjct: 101 PAAPDFAALY--PVYSTTSFNGKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDD 158 Query: 167 ----SLGSRALVVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPL-VLTVP 221 SL + +++++A+S++ L L L PL ++ + R + L+PL + Sbjct: 159 QWHASLRRQIVLLLLAISLVVL-----GLTMELRPLLALKDELATRRPDSLTPLRAGGLQ 213 Query: 222 AETHALVSAINAFMQRLAVHRSTMRRVIGDAAHQLRTPVTALVAQMELLATEDNEEKRQR 281 E +V AIN ++ RL + +R + DAAHQLRTP+ + +Q++ D+ + + Sbjct: 214 QELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQFARQLDDPARVAQ 273 Query: 282 HLTLLRERTRNLGALVNQLINHAMVQHRNDSSL-QARIDLGELVRSQMTEVLSNRSRTPH 340 L L+E +R++ L N+L+ + + + S+ +A +DL + + E+ + Sbjct: 274 VLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLLAVSAMVLEELSGLALKKGI 333 Query: 341 DLSLDVPPLPCLIRGDAISLGEAIKNILDNALQYGAP-GLLQVRLDSDGQRHWLRFIDDG 399 DL L+ ++ G+ L + N++DNAL+Y G + V L+ + + D+G Sbjct: 334 DLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNG 393 Query: 400 PGIPAADWERLRKPFSPRGE-QRMGASLGLSIVEEVMRAHGGELRFAYLPVGH-FAVVLD 457 PGIPA ER+ + F + G+ LGL+IV E+++A G +R G + Sbjct: 394 PGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVS 453 Query: 458 FPAWQA 463 PA Q+ Sbjct: 454 LPALQS 459 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,498,735 Number of extensions: 66649 Number of successful extensions: 336 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 27 Length of query: 468 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 379 Effective length of database: 1,198,455 Effective search space: 454214445 Effective search space used: 454214445 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)