BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0064.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311844|ref|YP_003775936.1| methylase of polypeptide chain ...   788   0.0  

>gi|300311844|ref|YP_003775936.1| methylase of polypeptide chain
           release factors protein [Herbaspirillum seropedicae
           SmR1]
          Length = 395

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/395 (99%), Positives = 392/395 (99%)

Query: 1   MTPHDDSLAWLTWQTGSTQQQLRWHSEAGNPPPKRVQEADDQIAADTAYKLACEGCGLLW 60
           MTPHDDSLAWLTWQTGSTQQQLRWHSEAGNPPPKRVQEADDQIAADTAYKLACEGCGLLW
Sbjct: 1   MTPHDDSLAWLTWQTGSTQQQLRWHSEAGNPPPKRVQEADDQIAADTAYKLACEGCGLLW 60

Query: 61  RGDFQNARQLLQALGRRIDKARERALAKAKDKPAGGVAAGAGAAAQAFHQHRQMQAQRAR 120
           RGDFQNARQLLQALGRRIDKARERALAKAKDKPA GVAAGAGAAAQAFHQHRQMQAQRAR
Sbjct: 61  RGDFQNARQLLQALGRRIDKARERALAKAKDKPAAGVAAGAGAAAQAFHQHRQMQAQRAR 120

Query: 121 ILGMLLIPVEPGFVVPLRRAPDVQAACCEAYGPELADTAFAVSLRELQGLIGAHEWRKKG 180
           ILGMLLIPVEPGFVVPLRRAPDVQAAC EAYGPELADTAFAVSLRELQGLIGAHEWRKKG
Sbjct: 121 ILGMLLIPVEPGFVVPLRRAPDVQAACREAYGPELADTAFAVSLRELQGLIGAHEWRKKG 180

Query: 181 VEIGALGARIHPWYGVFSPVRGEYVDLVAQAALPSTELAFDIGVGSGVLSAVLAQRGVRK 240
           VEIGALGARIHPWYGVFSPVRGEYVDLVAQAALPSTELAFDIGVGSGVLSAVLAQRGVRK
Sbjct: 181 VEIGALGARIHPWYGVFSPVRGEYVDLVAQAALPSTELAFDIGVGSGVLSAVLAQRGVRK 240

Query: 241 IVATDMDPRALACARQNLQQLGLHQQVQLQEADLFPEGRAPLVVCNPPWLPARPSSPIEH 300
           IVATDMDPRALACARQNLQQLGLHQQVQLQEADLFPEGRAPLVVCNPPWLPARPSSPIEH
Sbjct: 241 IVATDMDPRALACARQNLQQLGLHQQVQLQEADLFPEGRAPLVVCNPPWLPARPSSPIEH 300

Query: 301 AVYDPDSRMLLGFLNGLAQHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAKAGLVVAGR 360
           AVYDPDSRMLLGFLNGLAQHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAKAGLVVAGR
Sbjct: 301 AVYDPDSRMLLGFLNGLAQHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAKAGLVVAGR 360

Query: 361 HDIKPRHGKAVDRDDPLHAARSKETTTLWRLRVQA 395
           HDIKPRHGKAVDRDDPLHAARSKETTTLWRLR QA
Sbjct: 361 HDIKPRHGKAVDRDDPLHAARSKETTTLWRLRAQA 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,280,274
Number of extensions: 53772
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)