BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0061.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   588   e-169
gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   125   4e-30
gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...    61   1e-10

>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  588 bits (1515), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 291/292 (99%), Positives = 292/292 (100%)

Query: 1   MSNIRHKIHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI 60
           MSNIRHKIHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI
Sbjct: 1   MSNIRHKIHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI 60

Query: 61  GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ 120
           GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ
Sbjct: 61  GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ 120

Query: 121 MWVALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVNSPVQTASPTLYVAGS 180
           MWVALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGV+SPVQTASPTLYVAGS
Sbjct: 121 MWVALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVSSPVQTASPTLYVAGS 180

Query: 181 TTDGATLEIAAEVQERAVYVVRGEVSLDGERLEAGTLAILEPGAAVTLQAEGETVFMILG 240
           TTDGATLEIAAEVQERAVYVVRGEVSLDGERLEAGTLAILEPGAAVTLQAEGETVFMILG
Sbjct: 181 TTDGATLEIAAEVQERAVYVVRGEVSLDGERLEAGTLAILEPGAAVTLQAEGETVFMILG 240

Query: 241 GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNARDKSVFPDIPGESEWIPLPTH 292
           GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNARDKSVFPDIPGESEWIPLPTH
Sbjct: 241 GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNARDKSVFPDIPGESEWIPLPTH 292


>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  125 bits (314), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 151/285 (52%), Gaps = 25/285 (8%)

Query: 3   NIRHKIHGL-TRD-IGFPVRRLLPAAAARTVGPFVFFDHM---GPVEFDAGTTEGDVRPH 57
            I   ++G+ T+D  G  + R+L     R + PF+  D      P ++ AG  +     H
Sbjct: 11  QIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPD-----H 65

Query: 58  PHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVH 117
           PH G  TVTY+ +G M HRD+ G    + PG + WM AGRG+VHSE +P+   ++   + 
Sbjct: 66  PHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QENGLMS 121

Query: 118 GLQMWVALPADQEDGAPLFHHYAADEMPDTVVG-GARLHVLAGSAFGVNSPVQTASPT-L 175
           G Q+WV L    +   P +    A  +P+T    G R+ VLAGSAFG +  ++ A+   L
Sbjct: 122 GFQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPL 181

Query: 176 YVAGSTTDGATLEIAAEVQERA-VYVVRGEVSL---DGER--LEAGTLAILE--PGAA-V 226
           Y+  +   G TL +       A +YV  G +++   DGE    EAG +A+L   PG+A V
Sbjct: 182 YLDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGV 241

Query: 227 TLQAEGETVFMILGGAPLDGPRFVWWNFVSTSRDKIEAAKQAWNA 271
           T++AE  + F+++ G PL+ P   W  FV  +R+++E A   + A
Sbjct: 242 TVRAEQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRA 286


>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 57  HPHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPV 116
           H H  +  ++Y+  G + H+DS+G    I PG V  M+AG G+ HSE        Q    
Sbjct: 57  HGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEY----NHSQDGTT 112

Query: 117 HGLQMWVALP--ADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVNSPVQTASPT 174
           H LQ+W+ +P  A  E G    H  AAD+         +L ++A SA G +  V      
Sbjct: 113 HFLQIWI-MPDRAGAEPGYQEAHFSAADK-------DGKLRLVA-SADGRDGSVSMNQDA 163

Query: 175 LYVAGSTTDGATLEIAAEVQER--AVYVVRGEVSLDGERLEAGTLAIL 220
              AG   DGA        Q R   V+V RG++S++G+ LEAG    L
Sbjct: 164 QLYAG-LFDGAQTAEYTLPQGRLGYVHVARGKISVNGQALEAGDAVKL 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,797
Number of extensions: 48473
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)