BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0060.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   578   e-166
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   128   7e-31
gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...    81   1e-16

>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  578 bits (1491), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/287 (98%), Positives = 285/287 (99%)

Query: 1   MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 60
           MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF
Sbjct: 3   MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 62

Query: 61  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 120
           PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG
Sbjct: 63  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 122

Query: 121 FQLWVNLAGKDKMTEPGYQDIPAAGIPETAPQPGVRVRVLAGSAFGTDGAIRRATTEPLY 180
           FQLWVNLAGKDKMTEPGYQDIPAAGIPET+PQPGVRVRVLAGSAFGTDGAIRRATTEPLY
Sbjct: 123 FQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPLY 182

Query: 181 LDLALEAGTTLELPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVT 240
           LDLALEAGTTL LPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVT
Sbjct: 183 LDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVT 242

Query: 241 VRAEQASRFLLIAGKPLNEPIAQWGPFVMNTREQVEQAIDDFRAGRF 287
           VRAEQASRFLLIAGKPLNEPI QWGPFVMNTREQVEQAIDDFRAGRF
Sbjct: 243 VRAEQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRAGRF 289


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 25/285 (8%)

Query: 9   QIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPD-----H 63
            I   ++G+ T+D  G  + R+L     R + PF+  D      P ++ AG  +     H
Sbjct: 3   NIRHKIHGL-TRD-IGFPVRRLLPAAAARTVGPFVFFDHM---GPVEFDAGTTEGDVRPH 57

Query: 64  PHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QENGLMS 119
           PH G  TVTY+ +G M HRD+ G    + PG + WM AGRG+VHSE +P+   ++   + 
Sbjct: 58  PHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVH 117

Query: 120 GFQLWVNLAGKDKMTEPGYQDIPAAGIPETAPQPGVRVRVLAGSAFGTDGAIRRATTEPL 179
           G Q+WV L    +   P +    A  +P+T    G R+ VLAGSAFG    ++ A+   L
Sbjct: 118 GLQMWVALPADQEDGAPLFHHYAADEMPDTVVG-GARLHVLAGSAFGVSSPVQTASPT-L 175

Query: 180 YLDLALEAGTTLELPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGV 239
           Y+  +   G TLE+       A +YV  G +++   DGE    EAG +A+L   PG+A V
Sbjct: 176 YVAGSTTDGATLEIAAEVQERA-VYVVRGEVSL---DGER--LEAGTLAILE--PGAA-V 226

Query: 240 TVRAEQASRFLLIAGKPLNEPIAQWGPFVMNTREQVEQAIDDFRA 284
           T++AE  + F+++ G PL+ P   W  FV  +R+++E A   + A
Sbjct: 227 TLQAEGETVFMILGGAPLDGPRFVWWNFVSTSRDKIEAAKQAWNA 271


>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 18/177 (10%)

Query: 59  GFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLM 118
           GF  H HR  E ++Y+L G + H+D+ GN  ++ PG +Q M+AG G+ HSE    ++G  
Sbjct: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTT 112

Query: 119 SGFQLWV--NLAGKDKMTEPGYQDIPAAGIPETAPQPGVRVRVLAGSAFGTDGAIRRATT 176
              Q+W+  + AG     EPGYQ+        +A     ++R++A SA G DG++     
Sbjct: 113 HFLQIWIMPDRAG----AEPGYQEAHF-----SAADKDGKLRLVA-SADGRDGSVSMNQD 162

Query: 177 EPLYLDLALEAGTTLELPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNV 233
             LY  L  +   T E  +P     +++V  G ++V       +  EAG    LS V
Sbjct: 163 AQLYAGL-FDGAQTAEYTLPQGRLGYVHVARGKISVNG-----QALEAGDAVKLSAV 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,081,009
Number of extensions: 52928
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 3
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)