BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0053.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   529   e-151
gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   320   5e-89
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...   144   5e-36

>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  529 bits (1362), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSSLPASTHKHSPPPVNLHALRASCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRD 60
           MSSLPASTHKHSPPPVNLHALRASCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRD
Sbjct: 1   MSSLPASTHKHSPPPVNLHALRASCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRD 60

Query: 61  ETLYRLNDKFDMLYAIRLGHFKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVA 120
           ETLYRLNDKFDMLYAIRLGHFKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVA
Sbjct: 61  ETLYRLNDKFDMLYAIRLGHFKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVA 120

Query: 121 LEDSEVCEIPFASLEDLFRDMPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLL 180
           LEDSEVCEIPFASLEDLFRDMPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLL
Sbjct: 121 LEDSEVCEIPFASLEDLFRDMPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLL 180

Query: 181 NLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCD 240
           NLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCD
Sbjct: 181 NLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCD 240

Query: 241 LPTLRAVALGNDPCA 255
           LPTLRAVALGNDPCA
Sbjct: 241 LPTLRAVALGNDPCA 255


>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  320 bits (821), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 148/231 (64%), Positives = 187/231 (80%), Gaps = 1/231 (0%)

Query: 24  SCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRDETLYRLNDKFDMLYAIRLGHFKT 83
           SC+AC MHQLCLPMGLD+ DM+RL+++I RR KV RD+ LYR+ D+F  LYA+R+GHFKT
Sbjct: 40  SCTACGMHQLCLPMGLDESDMKRLDKIIGRR-KVARDDFLYRIGDRFTALYAVRVGHFKT 98

Query: 84  FQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFASLEDLFRDMPT 143
           +Q N +G +QITGFQM GELLGMDAI    H C+AVAL+DSEVCEIPFA LE LF  +P 
Sbjct: 99  YQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPH 158

Query: 144 LLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYMSRGYSSTRFQLRMTRE 203
           LLR FHR+MS EI+ EQ V++ LG+M A+Q+ AAFL+NLSSRY +RGYSSTRFQLRMTR+
Sbjct: 159 LLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQ 218

Query: 204 EIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCDLPTLRAVALGNDPC 254
           ++GNYLGL +ES+SRL++ F+K G++ V  RDVE+ DL  L+ +A G D C
Sbjct: 219 DVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDAC 269


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  144 bits (364), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 140/228 (61%), Gaps = 3/228 (1%)

Query: 24  SCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRDETLYRLNDKFDMLYAIRLGHFKT 83
           +C  C + + C P  L   +  + EQ++ RRR+V R E  YR +D+   ++ +RLG FKT
Sbjct: 17  TCRNCIVKKHCFPHDLSPEETAQFEQLVVRRRRVLRGEFAYRAHDECSKIFIVRLGSFKT 76

Query: 84  FQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFASLEDLFRDMPT 143
            + +  GG  +  F   G+LLG++      +  + +ALEDS++CE+ F  LE+L R +P 
Sbjct: 77  VRVSRYGGMDVIAFHHTGDLLGIEGASHSAYEVDTIALEDSQICELSFVGLEELSRKIPR 136

Query: 144 LLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYMSR-GYSSTRFQLRMTR 202
           L +Q  R +S E++  Q+  L L +  ++Q+ A FLL+L SR  SR G +ST F LRM+R
Sbjct: 137 LHQQVWRRLSNEVTLMQQQSLLLKA-RSEQRFAFFLLDL-SRISSRCGNASTEFSLRMSR 194

Query: 203 EEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCDLPTLRAVALG 250
            +IG +LGL  ES+SRL++ F+K+G+I+V+ R V +    TL  +A G
Sbjct: 195 TDIGLFLGLTNESMSRLISKFRKAGLIDVSVRKVRVLSPSTLEELASG 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 748,078
Number of extensions: 28775
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 3
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)