BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0049.p
         (525 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311857|ref|YP_003775949.1| integral membrane protein [Herb...   909   0.0  
gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein...    55   9e-09

>gi|300311857|ref|YP_003775949.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/467 (98%), Positives = 465/467 (99%)

Query: 59  MRLPSMTTHSFRPASQAQAAARRQSATALQALLLRMHFYIGLFVGPFILVAALTGTLYVL 118
           MRLPSMTTHSF+PASQAQAAARRQSATALQALLLRMHFYIGLFVGPFILVAALTGTLYVL
Sbjct: 1   MRLPSMTTHSFQPASQAQAAARRQSATALQALLLRMHFYIGLFVGPFILVAALTGTLYVL 60

Query: 119 TPQIESHLYATQLRNASQGAAQPLAAQVQAAQAFLGPQARLFAVRPAKAPGWNTRVMFSQ 178
           TPQIESHLYATQLRNASQG AQPLAAQVQAA+AFLGPQARLFAVRPAKAPGWNTRVMFSQ
Sbjct: 61  TPQIESHLYATQLRNASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKAPGWNTRVMFSQ 120

Query: 179 PGLGDSESRAIFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGELGRNYSELAA 238
           PGLGDSESRAIFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGELGRNYSELAA
Sbjct: 121 PGLGDSESRAIFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGELGRNYSELAA 180

Query: 239 SWLWLGALGGVWLWWRARARGRVQAARPLTARRLHALVGLWIVIGLMFFSATGLTWSRWA 298
           SWLWLGALGGVWLWWRAR RGRVQAARPLTARRLHALVGLWIVIGL+FFSATGLTWSRWA
Sbjct: 181 SWLWLGALGGVWLWWRARTRGRVQAARPLTARRLHALVGLWIVIGLVFFSATGLTWSRWA 240

Query: 299 GERVNLMRAQLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFDMVQ 358
           GERVNLMRAQLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFDMVQ
Sbjct: 241 GERVNLMRAQLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFDMVQ 300

Query: 359 SIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFASFP 418
           SIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFASFP
Sbjct: 301 SIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFASFP 360

Query: 419 LIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIALGYLMWWRRRPAAGASLAPLSA 478
           LIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIALGYLMWWRRRPAAGASLAPLSA
Sbjct: 361 LIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIALGYLMWWRRRPAAGASLAPLSA 420

Query: 479 AFMQMSLPQRASVLLLALLLGWNLPLMGASLLLFLLVDVIRYRRAGR 525
           AFMQMSLPQRASVLLLALLLGWNLPLMGASLL+FLLVDVIRYRRAGR
Sbjct: 421 AFMQMSLPQRASVLLLALLLGWNLPLMGASLLVFLLVDVIRYRRAGR 467


>gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein
           component [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 169/416 (40%), Gaps = 87/416 (20%)

Query: 87  LQALLLRMHFYIGLFVGPFILVAALTGTLYVLTPQIESHL----YATQLRNASQGAAQPL 142
            + +  ++H++IG+  G  ++   +TG L     +I   L       Q+R  +    Q +
Sbjct: 2   FKKIWFQLHWFIGITAGTVLMTIGVTGALLAFREEIMDLLSPGVMHVQVRQQATLTPQQV 61

Query: 143 AAQVQAAQAFLGPQARLFAVRPAKAPGWNTRVMFSQPGLGDSESRAIFVDPVSLQVRGDL 202
             +++  +    PQ R+  +  +  PG + RV+F+ P  G+   +A +VDP         
Sbjct: 62  LEKLRQEE----PQRRITTMTLSAEPGDSVRVVFAPPP-GERRGQARYVDPY-------- 108

Query: 203 IVYGTSGVLPLRTTLDYL------HRNLML-GELGRNYSELAASWLWLGALGGVWLWWRA 255
               T  +LP  T +++       HR L+L  E+G+      A  L + AL G++L W  
Sbjct: 109 ----TGALLPPVTGMEFFEFTERFHRWLLLPTEIGKIVLGTLALCLLMLALSGLYLRWPR 164

Query: 256 RA---RGRVQAARPLTAR----RLHALVGLWIVIGLMFFSATGLTWS-RWAGERVNLMRA 307
           RA   R  ++    L  R     LH+++G W ++  + F+ TG  W+  W  + VN +  
Sbjct: 165 RALSLRAWLRLDFQLQGRSLLWNLHSVIGTWSLVMYVIFATTGAYWALDWFKDGVNTLAG 224

Query: 308 QLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFDMVQS----IARA 363
           +         T+  P    M+ GE        G     P    P   D+ Q+    + +A
Sbjct: 225 E---------TRRAP----MARGE--------GKKKDGPNNQTPVALDLTQAWNAFLTKA 263

Query: 364 GGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSR-ADFASFPLIAK 422
               +A++ + P +  Q            P Q+  +  DA   R  SR         I +
Sbjct: 264 PDYQSAQLRL-PEQGTQ------------PLQIFFLGHDAPHERARSRMVVLPQSGEIKQ 310

Query: 423 LIRWGVDA------------HMGVLFGVANQILMAAFGIALTGLIALGYLMWWRRR 466
           L R+   +            HMG  FG+  +I+MA   + +      G++++  RR
Sbjct: 311 LERYEDKSTGGRFIAAIYPLHMGTYFGLPGRIIMAIASLMMPLFGITGWMLYLDRR 366


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,297,131
Number of extensions: 43213
Number of successful extensions: 266
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 2
Length of query: 525
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 435
Effective length of database: 1,193,720
Effective search space: 519268200
Effective search space used: 519268200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)