BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0046.p
         (129 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311859|ref|YP_003775951.1| CobW/P47K family protein [Herba...   273   4e-75
gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protei...    90   7e-20

>gi|300311859|ref|YP_003775951.1| CobW/P47K family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 404

 Score =  273 bits (697), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   LHPQRFFDLINTEWPGVVRSKGFFWLASRPTQAGSWSQAGAVCRHGLAGKWWAAVPREQW 60
           LHPQRFFDLINTEWPGVVRSKGFFWLASRPTQAGSWSQAGAVCRHGLAGKWWAAVPREQW
Sbjct: 276 LHPQRFFDLINTEWPGVVRSKGFFWLASRPTQAGSWSQAGAVCRHGLAGKWWAAVPREQW 335

Query: 61  PQDQESVDFILAHWDENVGDARQELVLIGMAMDQEALRARLDACLLSDAEMAQGPLGWAR 120
           PQDQESVDFILAHWDENVGDARQELVLIGMAMDQEALRARLDACLLSDAEMAQGPLGWAR
Sbjct: 336 PQDQESVDFILAHWDENVGDARQELVLIGMAMDQEALRARLDACLLSDAEMAQGPLGWAR 395

Query: 121 MRDPFPLWG 129
           MRDPFPLWG
Sbjct: 396 MRDPFPLWG 404


>gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score = 89.7 bits (221), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   LHPQRFFDLINTEWPG--VVRSKGFFWLASRPTQAGSWSQAGAVCRHGLAGKWWAAVPRE 58
            HP R  D +   W    ++R KG+ W++SR +      Q G   + G  G+WW  +   
Sbjct: 276 FHPGRLLDWLGRPWRNGRLLRCKGYLWISSRYSDIALLVQTGGQFQWGFVGRWWRFIEPA 335

Query: 59  QWPQDQESVDFILAHWDENVGDARQELVLIGMAMDQEALRARLDACLLSDAEMAQGPLGW 118
           QWPQD      I   WD   GD RQELV IG  +D + L   LDACLL+  E+  GP  W
Sbjct: 336 QWPQDTYRRQGIQEKWDALAGDCRQELVFIGQGIDGDLLTEELDACLLTTTEIEAGPDAW 395

Query: 119 ARM 121
           A++
Sbjct: 396 AQL 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 476,367
Number of extensions: 19718
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 129
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,264,745
Effective search space: 68296230
Effective search space used: 68296230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)