BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0035.p
         (1205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   902   0.0  
gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   543   e-155

>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1180

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/420 (99%), Positives = 420/420 (100%)

Query: 26  LPTVLASSTDDVPLAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFI 85
           +PTVLASSTDDVPLAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFI
Sbjct: 1   MPTVLASSTDDVPLAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFI 60

Query: 86  SGYRGSPLGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVY 145
           SGYRGSPLGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVY
Sbjct: 61  SGYRGSPLGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVY 120

Query: 146 AMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIP 205
           AMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIP
Sbjct: 121 AMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIP 180

Query: 206 MLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVM 265
           MLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVM
Sbjct: 181 MLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVM 240

Query: 266 PEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASG 325
           PEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASG
Sbjct: 241 PEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASG 300

Query: 326 KSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQM 385
           KSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQM
Sbjct: 301 KSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQM 360

Query: 386 VEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIAR 445
           VEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIAR
Sbjct: 361 VEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIAR 420


>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1199

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/405 (63%), Positives = 312/405 (77%), Gaps = 9/405 (2%)

Query: 47  KYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSPLGGLDEALWHAQPH 106
           KYT   G ++++GIQALVRLP+LQ+  D+ AGLNTAGFI+GYRGSPLG +D+    A+ +
Sbjct: 21  KYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQTAEKARKY 80

Query: 107 LAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKGPGVDRCGDVLKHMN 166
           L A ++KF PG+NED+AAT+VWGTQQV L   + YDGV+++WYGKGPGVDRCGDV KH N
Sbjct: 81  LEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRCGDVFKHAN 140

Query: 167 HAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDLGLHGWAMS 226
            AGTS HGGVL++AGDDH A SST  HQS+HI  A  IP+LYP +VQEYLD GLHGWAMS
Sbjct: 141 MAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMS 200

Query: 227 RYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNARLSTDTLGVQARKQ 286
           RY+G  V  K + D VES  SV  DP RVQI+LP+DF +P  GLN R     LG     Q
Sbjct: 201 RYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTVLG-----Q 255

Query: 287 EALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSELGIDEAFAA 346
           EA M +YK YAALAYARAN+LNR++ DSP+AR+GII +GKSYLD  +AL +LGIDE  A 
Sbjct: 256 EARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAAR 315

Query: 347 EIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVI 406
           +IG+RL+KV M WPLE +GVREFAQGLDEILVVEEKRQ++EYQLKE+LYNWRDDVRPRV+
Sbjct: 316 DIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVV 375

Query: 407 GKFDEKGEWVAPR----GEWLLTSKADFSVAQIARVIAARIARSI 447
           GKFD+ GEW   +    G WLL +  + + AQIAR IA RI+R  
Sbjct: 376 GKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYF 420


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.132    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,811,611
Number of extensions: 98529
Number of successful extensions: 486
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 2
Length of query: 1205
Length of database: 1,619,870
Length adjustment: 96
Effective length of query: 1109
Effective length of database: 1,165,310
Effective search space: 1292328790
Effective search space used: 1292328790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 136 (57.0 bits)