BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0022.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311876|ref|YP_003775968.1| phenylacetyl-CoA-ligase [Herbas...   739   0.0  
gi|300313420|ref|YP_003777512.1| phenylacetyl-CoA-ligase [Herbas...   113   3e-26

>gi|300311876|ref|YP_003775968.1| phenylacetyl-CoA-ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/360 (100%), Positives = 360/360 (100%)

Query: 1   LPVTRKSDLKELQTRESPFGGLNATPTRQLRRLFVSPGPIFDPEGHGADWWRFASPMKAL 60
           LPVTRKSDLKELQTRESPFGGLNATPTRQLRRLFVSPGPIFDPEGHGADWWRFASPMKAL
Sbjct: 64  LPVTRKSDLKELQTRESPFGGLNATPTRQLRRLFVSPGPIFDPEGHGADWWRFASPMKAL 123

Query: 61  GLQAGHILQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGT 120
           GLQAGHILQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGT
Sbjct: 124 GLQAGHILQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALKPDAYVGT 183

Query: 121 PSFLKIIIEKAQEMGADISSVQRALVSAEALPPSLRNWFHEHGVPQVLQLYASADIGNIA 180
           PSFLKIIIEKAQEMGADISSVQRALVSAEALPPSLRNWFHEHGVPQVLQLYASADIGNIA
Sbjct: 184 PSFLKIIIEKAQEMGADISSVQRALVSAEALPPSLRNWFHEHGVPQVLQLYASADIGNIA 243

Query: 181 YETMSEGAVHPGMVLDEALILEIVRPGTGDPVAAGEVGEVVVTSFNPDYPLIRFGTGDLS 240
           YETMSEGAVHPGMVLDEALILEIVRPGTGDPVAAGEVGEVVVTSFNPDYPLIRFGTGDLS
Sbjct: 244 YETMSEGAVHPGMVLDEALILEIVRPGTGDPVAAGEVGEVVVTSFNPDYPLIRFGTGDLS 303

Query: 241 AVVPGVSPCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHADVLRARLVVSGEM 300
           AVVPGVSPCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHADVLRARLVVSGEM
Sbjct: 304 AVVPGVSPCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADVLRRHADVLRARLVVSGEM 363

Query: 301 ANDVMTLHCEVGDPENPAIDVGALAGSLREVTKLRGEVLLVAPGSLPNDGKVIEDARKYE 360
           ANDVMTLHCEVGDPENPAIDVGALAGSLREVTKLRGEVLLVAPGSLPNDGKVIEDARKYE
Sbjct: 364 ANDVMTLHCEVGDPENPAIDVGALAGSLREVTKLRGEVLLVAPGSLPNDGKVIEDARKYE 423


>gi|300313420|ref|YP_003777512.1| phenylacetyl-CoA-ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 175/391 (44%), Gaps = 51/391 (13%)

Query: 1   LPVTRKSDLKELQTRESPFGGLNATPTRQLRRLFVSPGPIFDPEGHGA-----DWWR--F 53
            P T K DL++      PFG + A P  Q+ R+  S G    P   G      D W    
Sbjct: 67  FPFTTKKDLRD----HYPFG-MFAVPREQVVRVHASSGTTGKPTVVGYTQNDIDTWATVV 121

Query: 54  ASPMKALGLQAGHILQNCFAYHFTPAAFMVEGAAARLGCAVIPAGIGQTELQVNAMAALK 113
           A  ++A G + G I+Q  + Y            A +LGC VIP   GQTE QV  +   K
Sbjct: 122 ARSIRAAGGRRGDIVQISYGYGLFTGGLGAHYGAEKLGCTVIPMSGGQTEKQVQLIRDFK 181

Query: 114 PDAYVGTPSFLKIIIEKAQEMGAD--ISSVQRALVSAEALPPSLRNWFHEHGVPQVLQLY 171
           P   + TPS++  +IE+ Q  G D   SS++  +  AE    ++R    +      + +Y
Sbjct: 182 PSIIMVTPSYMLNVIEEFQRQGMDPASSSLKVGIFGAEPWTDAMRREIQQRAGLDAVDIY 241

Query: 172 ASADIG--NIAYETMSEGAVHPGMVLDEALILEIVRPGTGDPVAAGEVGEVVVTSFNPD- 228
             +++    +A E + E    P ++ ++    EI+ P TG+ +  G  GE+V TS + + 
Sbjct: 242 GLSEVMGPGVASECI-ESKDGP-VIWEDHFYPEIIDPDTGEVLPDGVEGELVFTSLSKEA 299

Query: 229 YPLIRFGTGDLSAVVPGVSPCGRTNTRIKGWMGRADQTTKVRGMFVHPSQVADV------ 282
            P+IR+ T DL+ ++P   P  R+  RI    GR+D    +RG+ V P+Q+ ++      
Sbjct: 300 LPMIRYRTRDLTRLLP---PTSRSMRRIGKITGRSDDMLIIRGVNVFPTQIEELILKLPQ 356

Query: 283 --------LRRHADVLRARLVVSGEMANDVMTLHCEVGDPENPAIDVGALAGSLREVTKL 334
                   + RH  +    + V  E+  DV   H E  + E        L  S++    +
Sbjct: 357 LAPQYQLQIERHGHM--DSMSVFAELREDVSNEHVEALEKE--------LQHSIKTYVGI 406

Query: 335 RGEVLLVAPG-----SLPNDGKVIEDARKYE 360
             +V +V  G     S+    +VI++ +K E
Sbjct: 407 STKVTVVPAGMIERTSVGKAKRVIDNRKKAE 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,220,362
Number of extensions: 54206
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)