BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0020.p (286 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 364 e-102 gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC t... 164 1e-41 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 122 3e-29 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 114 1e-26 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 109 3e-25 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 364 bits (934), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MNATPIQTSAAVPSAAPATVAKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANG 60 MNATPIQTSAAVPSAAPATVAKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANG Sbjct: 3 MNATPIQTSAAVPSAAPATVAKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANG 62 Query: 61 AGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLT 120 AGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLT Sbjct: 63 AGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLT 122 Query: 121 VEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTA 173 VEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTA Sbjct: 123 VEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTA 175 >gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/153 (56%), Positives = 107/153 (69%), Gaps = 6/153 (3%) Query: 24 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 83 L I IEV Y +L L+ VSL+V G+I ALLGANGAGKSTTLKA+SNLL A+RG V Sbjct: 6 LQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQVRA 65 Query: 84 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTG---AYTRGISNAEVK 140 G I + G V R +P +LV++G+ QV+EGRHCF LTVEENLLTG +TR ++ Sbjct: 66 GHILYEGREVGRSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTR---RTVLR 122 Query: 141 HELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTA 173 LE+IY +FP+L RR+S +G SGGEQQM A Sbjct: 123 AALERIYAFFPQLHQRRRSLAGLCSGGEQQMLA 155 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 7/150 (4%) Query: 24 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 83 L + ++ V Y H+ V KG+SL + EG+I AL+GANGAGKST+L AIS L+ A+RG V Sbjct: 11 LQVEDLAVAYGHIEAV-KGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL- 68 Query: 84 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHEL 143 G+ + +M+P+ +V+ GV+QV EGR LTVEENL GAYTR + V +L Sbjct: 69 ----LHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDG-VARDL 123 Query: 144 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTA 173 E +Y FP LK R +G SGGEQQM A Sbjct: 124 EWVYSLFPVLKNRAAGLAGNLSGGEQQMLA 153 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 9/155 (5%) Query: 24 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 83 L I+N+ Y V VL G+S++VP+GK+V L+G+NGAGK+TT++AIS ++ + G+VT Sbjct: 2 LTISNLHAAYGKV-EVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 84 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGA---YTRGISNAEVK 140 G G+ + + + + + G+ EGR F ++V +NLL GA +TR ++ Sbjct: 61 G-----GKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIA 115 Query: 141 HELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTASA 175 H+LE+ + FPRLK R+ +G SGGEQQM A A Sbjct: 116 HDLERALELFPRLKERQSQLAGTLSGGEQQMLAMA 150 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 5/152 (3%) Query: 24 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 83 L + + V Y + V KG+ L+V EG++V L+GANGAGK+TTLKAI+ L A R + Sbjct: 6 LKVQQLSVAYGGIQAV-KGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASR---VE 61 Query: 84 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHEL 143 G IE+ G+ + +LVK + V EGR F ++++ENLL GAYT ++ ++ Sbjct: 62 GHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSD-DKGQIAADI 120 Query: 144 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTASA 175 +K + FPRLK R +G SGGEQQM A A Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMA 152 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.132 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 627,784 Number of extensions: 21500 Number of successful extensions: 318 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 300 Number of HSP's successfully gapped: 45 Length of query: 286 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 202 Effective length of database: 1,222,130 Effective search space: 246870260 Effective search space used: 246870260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)