BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0019.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311878|ref|YP_003775970.1| amino acid ABC transporter peri...   905   0.0  
gi|300310288|ref|YP_003774380.1| hypothetical protein Hsero_0955...   428   e-121

>gi|300311878|ref|YP_003775970.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 443

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/443 (99%), Positives = 442/443 (99%)

Query: 1   MKSIKHLRQLLLATACAASLLSAAAPGLAQASDQFIAIPSYRVGPYGTNGQSYYGGYVDY 60
           MKSIKHLRQLLLATACAASLLSAAAP LAQASDQFIAIPSYRVGPYGTNGQSYYGGYVDY
Sbjct: 1   MKSIKHLRQLLLATACAASLLSAAAPALAQASDQFIAIPSYRVGPYGTNGQSYYGGYVDY 60

Query: 61  LNYINIKEGGVNGVKLSWEECETEYNNAKGVECYERMKNKNPVTHGTAINPMATGISYAL 120
           LNYINIKEGGVNGVKLSWEECETEYNNAKGVECYERMKNKNPVTHGTAINPMATGISYAL
Sbjct: 61  LNYINIKEGGVNGVKLSWEECETEYNNAKGVECYERMKNKNPVTHGTAINPMATGISYAL 120

Query: 121 IDKTAEDKVPLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNGSLAGKK 180
           IDKTAEDKVPLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNGSLAGKK
Sbjct: 121 IDKTAEDKVPLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNGSLAGKK 180

Query: 181 IVFLYHDSAYGKEPIVALQAEASIGKFKLVEIPVAHPGNEQGAQWLRIRQENPDYVIFWG 240
           IVFLYHDSAYGKEPIVALQAEASIGKFKLVEIPVAHPGNEQGAQWLRIRQENPDYVIFWG
Sbjct: 181 IVFLYHDSAYGKEPIVALQAEASIGKFKLVEIPVAHPGNEQGAQWLRIRQENPDYVIFWG 240

Query: 241 WGVMNQTALKAAQKVGYARDKIVGSWWAGSEEDTIPAGDAAKGYLSATWNVAGKDVPVIA 300
           WGVMNQTALKAAQKVGYARDKIVGSWWAGSEEDTIPAGDAAKGYLSATWNVAGKDVPVIA
Sbjct: 241 WGVMNQTALKAAQKVGYARDKIVGSWWAGSEEDTIPAGDAAKGYLSATWNVAGKDVPVIA 300

Query: 301 DIDKVVYGAGKGNMQDKNKLGSILYNRGVSAAIATVEAVRTAQGKYGKGKVMSGEQVRWG 360
           DIDKVVYGAGKGNMQDKNKLGSILYNRGVSAAIATVEAVRTAQGKYGKGKVMSGEQVRWG
Sbjct: 301 DIDKVVYGAGKGNMQDKNKLGSILYNRGVSAAIATVEAVRTAQGKYGKGKVMSGEQVRWG 360

Query: 361 FENLNITDARLKALGATGLLPEIKTSCDNHEGSGKVKIQQWDGSKWVLVSDWIEGNKNLI 420
           FENLNITDARLKALGATGLLPEIKTSCDNHEGSGKVKIQQWDGSKWVLVSDWIEGNKNLI
Sbjct: 361 FENLNITDARLKALGATGLLPEIKTSCDNHEGSGKVKIQQWDGSKWVLVSDWIEGNKNLI 420

Query: 421 HPLFKASAAKYAKEKGITPACMK 443
           HPLFKASAAKYAKEKGITPACMK
Sbjct: 421 HPLFKASAAKYAKEKGITPACMK 443


>gi|300310288|ref|YP_003774380.1| hypothetical protein Hsero_0955
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  428 bits (1100), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/431 (51%), Positives = 287/431 (66%), Gaps = 7/431 (1%)

Query: 9   QLLLATACAASLLSAAAPGLAQASDQFIAIPSYRVGPYGTNGQSYYGGYVDYLNYINIKE 68
           ++L A A    LL+A     A+A +QF  + SYRVGPY   G  ++GG++DYLN +N+++
Sbjct: 5   KILKAIALTTVLLTAGLQQ-ARADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVNLRD 63

Query: 69  GGVNGVKLSWEECETEYNNAKGVECYERMKNKNPVTHGTAINPMATGISYALIDKTAEDK 128
           GGV GVKL+WEE ET+Y   +GVE YER+K +  +      NP++ GI+YAL+D+   DK
Sbjct: 64  GGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIA---TWNPLSVGIAYALLDRVTADK 120

Query: 129 VPLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNGS--LAGKKIVFLYH 186
           VPL+ I +GRTD  DG VF Y FPL+     + S IV Y+A K  G+  L GKKIV LYH
Sbjct: 121 VPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGADKLKGKKIVVLYH 180

Query: 187 DSAYGKEPIVALQAEASIGKFKLVEIPVAHPGNEQGAQWLRIRQENPDYVIFWGWGVMNQ 246
            S YGKE I   +  +    F L +I V HPGN+Q AQWL IR+  PDYV+  GWGVMN 
Sbjct: 181 GSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNP 240

Query: 247 TALKAAQKVGYARDKIVGSWWAGSEEDTIPAGDAAKGYLSATWNVAGKDVPVIADIDKVV 306
            ALK AQK G+  D+I+G+ W+ SEED IPAGDAAKGY++ T   AG   PV+ +I K V
Sbjct: 241 VALKTAQKSGFPADRIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTV 300

Query: 307 YGAGKGNMQDKNKLGSILYNRGVSAAIATVEAVRTAQGKYGKGKVMSGEQVRWGFENLNI 366
           YGAGKGN+QD  ++GS+ +N GV   I  VEA+R AQ ++GK + ++G+++RWG ENLNI
Sbjct: 301 YGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQARFGK-RTLTGDEIRWGLENLNI 359

Query: 367 TDARLKALGATGLLPEIKTSCDNHEGSGKVKIQQWDGSKWVLVSDWIEGNKNLIHPLFKA 426
             AR  ALGA GL   I  + DNHEG G V  QQWDG +W +VSDWI  +  L+ P+ + 
Sbjct: 360 DQARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWHVVSDWIAPDWKLLRPIIEK 419

Query: 427 SAAKYAKEKGI 437
           SA  YAKEK I
Sbjct: 420 SALAYAKEKNI 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,418,540
Number of extensions: 61895
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)