BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0016.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 592 e-170 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 262 2e-71 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 223 2e-59 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 218 4e-58 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 217 9e-58 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 592 bits (1525), Expect = e-170, Method: Compositional matrix adjust. Identities = 288/289 (99%), Positives = 288/289 (99%) Query: 1 MKRHLSSEILPSGLPPVASPDDEAPAVAVNGRRIGEVILDLQNISLSFGGVKALTDISFD 60 MKRHLSSEILPSGLPPVASPDDEAPAVA NGRRIGEVILDLQNISLSFGGVKALTDISFD Sbjct: 5 MKRHLSSEILPSGLPPVASPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTDISFD 64 Query: 61 VREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIARTFQ 120 VREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIARTFQ Sbjct: 65 VREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIARTFQ 124 Query: 121 NIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEIQHIR 180 NIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEIQHIR Sbjct: 125 NIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEIQHIR 184 Query: 181 KTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTI 240 KTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTI Sbjct: 185 KTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTI 244 Query: 241 VLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGTSH 289 VLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGTSH Sbjct: 245 VLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGTSH 293 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 262 bits (670), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 129/252 (51%), Positives = 174/252 (69%) Query: 38 ILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILY 97 +L L+ +SLSFGGV+AL + + E EI A+IGPNGAGKSS++NV++G+Y P +G + Sbjct: 8 VLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 Query: 98 RGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAAR 157 G+ + + + R G+ARTFQN+ALFKG++V DNI+ GR MR+ + + G AR Sbjct: 68 GGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRAR 127 Query: 158 NEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGM 217 E I+ R + EQ++ FL+++ + VG LPYGLQKRVELARAL A P +LLLDEPMAGM Sbjct: 128 RERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAGM 187 Query: 218 NVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGN 277 V EK +M F+ DQF T I+LIEHD+G+V +SDRVVVL +G KI DG P V + Sbjct: 188 TVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQD 247 Query: 278 EDVIKAYLGTSH 289 VI+AYLG + Sbjct: 248 AAVIEAYLGVAQ 259 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 223 bits (568), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/251 (43%), Positives = 166/251 (66%) Query: 36 EVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRI 95 + +L++ N+S+ FGG+ A+ +S V+E E+ AIIGPNGAGK+++ N I+G Y P G I Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 96 LYRGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGA 155 + G A +A+QG+ RTFQNI LFK MTV++N++ ++ ++ + LLS + A Sbjct: 66 MLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPA 125 Query: 156 ARNEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMA 215 R E E ++ +D L + + G L YGLQ+RVE+AR + +P +LLLDEP A Sbjct: 126 YRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 Query: 216 GMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVM 275 G+N +EKQ++ + I + + G ++LIEHDM ++M ISDR++V+++GK I GTPE+V Sbjct: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 Query: 276 GNEDVIKAYLG 286 +E VIKAYLG Sbjct: 246 SDERVIKAYLG 256 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 218 bits (556), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 108/256 (42%), Positives = 158/256 (61%), Gaps = 1/256 (0%) Query: 34 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 93 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 94 RILYRGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWW 153 G+P + P +A+ GIARTFQNI LF MTVL+N+M G + + R + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 154 GAARNEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEP 213 AAR EE R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 214 MAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEE 273 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 274 VMGNEDVIKAYLGTSH 289 V N VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 217 bits (553), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 158/256 (61%), Gaps = 1/256 (0%) Query: 34 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 93 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 94 RILYRGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWW 153 G+P + P +A+ GIARTFQNI LF MTVL+N+M G + + + + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 154 GAARNEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEP 213 AAR EE R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 214 MAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEE 273 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 274 VMGNEDVIKAYLGTSH 289 V N VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 947,706 Number of extensions: 42177 Number of successful extensions: 525 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 329 Number of HSP's successfully gapped: 138 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)