BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0012.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311884|ref|YP_003775976.1| two component response regulato...   313   4e-87
gi|300312037|ref|YP_003776129.1| sensory transduction regulatory...    82   1e-17
gi|300311809|ref|YP_003775901.1| two component response regulato...    74   4e-15
gi|300312512|ref|YP_003776604.1| sensory transduction regulatory...    57   8e-10

>gi|300311884|ref|YP_003775976.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score =  313 bits (802), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHP 60
           MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHP
Sbjct: 1   MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHP 60

Query: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120
           YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST
Sbjct: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120

Query: 121 DPKEFMGTVVDTGIYWRNRNRPARNEEGAGR 151
           DPKEFMGTVVDTGIYWRNRNRPARNEEGAGR
Sbjct: 121 DPKEFMGTVVDTGIYWRNRNRPARNEEGAGR 151


>gi|300312037|ref|YP_003776129.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 3   IEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEY-AQRRDLHPY 61
           + +  I++VD SPE  EL R  L   KL     WF DAE A +  F  +  A   DL P 
Sbjct: 1   MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADL-PC 59

Query: 62  LILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTD 121
           LILL+  LP M G + L +++++A T  +PVVMF++S D  D  ++   GAN Y+VK  D
Sbjct: 60  LILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVD 119

Query: 122 PKEFMGTVVDTGIYW 136
            + FM  V  T   W
Sbjct: 120 ARAFMELVSQTVRRW 134


>gi|300311809|ref|YP_003775901.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 74.3 bits (181), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 1/140 (0%)

Query: 4   EQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLI 63
           +  +IILV+D    A L    L    L +      D + A ++ F  + + R +L   ++
Sbjct: 5   QSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRS-RTELQQLVV 63

Query: 64  LLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPK 123
           LLD+N+P ++G + L+ +K++   S IPV+M +++DD R+I + YE G N Y+ K  + +
Sbjct: 64  LLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEYE 123

Query: 124 EFMGTVVDTGIYWRNRNRPA 143
           +F+  +   G + +    P 
Sbjct: 124 DFIEAIRRLGFFLQVVKLPG 143


>gi|300312512|ref|YP_003776604.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 56.6 bits (135), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 8   IILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLILLDL 67
           I++++ + E  EL R AL        L W+ +A+ A +            L P LILLD 
Sbjct: 6   ILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARL-PDLILLDP 64

Query: 68  NLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMG 127
            +   +G DF+  +K+   T  IPVV+F  SD   ++    E GA+ Y++K     ++M 
Sbjct: 65  GMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQYMQ 124

Query: 128 TVVDTG 133
            VV+  
Sbjct: 125 AVVECA 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 365,658
Number of extensions: 11127
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 5
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)