BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0009.p (610 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311887|ref|YP_003775979.1| two component sensor histidine ... 1243 0.0 gi|300311810|ref|YP_003775902.1| two component sensor histidine ... 128 2e-30 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 119 9e-28 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 98 2e-21 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 87 4e-18 >gi|300311887|ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 633 Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 609/610 (99%), Positives = 609/610 (99%) Query: 1 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN 60 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN Sbjct: 24 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN 83 Query: 61 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV 120 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV Sbjct: 84 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV 143 Query: 121 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL 180 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL Sbjct: 144 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL 203 Query: 181 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE 240 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE Sbjct: 204 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE 263 Query: 241 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL 300 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL Sbjct: 264 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL 323 Query: 301 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL 360 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL Sbjct: 324 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL 383 Query: 361 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE 420 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE Sbjct: 384 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE 443 Query: 421 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ 480 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ Sbjct: 444 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ 503 Query: 481 VWENLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 540 VWENLLSNAVKFSSKS QPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR Sbjct: 504 VWENLLSNAVKFSSKSEQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 563 Query: 541 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREAGSGS 600 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREAGSGS Sbjct: 564 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREAGSGS 623 Query: 601 STFTNEAARP 610 STFTNEAARP Sbjct: 624 STFTNEAARP 633 >gi|300311810|ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 535 Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 113/384 (29%), Positives = 174/384 (45%), Gaps = 54/384 (14%) Query: 251 TELKWLGYTREQVV--GRMTHTDLLAPASAERYLRELQPQFMLKREISG----IDLNYRR 304 E + LG R Q + R T T L A L R I G + +N RR Sbjct: 159 NEERHLGSLRNQALQSARQTQTAWLIAAVIGSILAAALASVAFTRSIGGRISVLIVNARR 218 Query: 305 -ADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSV 363 ADG A V D L+ + + A ++ E + L+R+A L + Sbjct: 219 LADGLPLAARVKG-----HDEISLLDDALHRSSERLQEASQQSEQYRSQLERRARELTEL 273 Query: 364 NKEL-------ESFSYSVSHDLRAPLRAISGYAMILEEDYADAID----------EKGR- 405 N +L E F YSVSHDLR+PL + G++ + D ++ +K + Sbjct: 274 NADLLQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEIGHATTDLLNAVQALPVPDADKAKL 333 Query: 406 ---------EQLQVIRRNVRKMDELINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLR- 455 L+ I+ V + +I+ +L+L+++ E M+ + ++++A + Sbjct: 334 RSVVADDIQPALRFIQNAVTRSAGIIDSMLRLSRAGRVEYQPVMLDMNVIAQRIVAAMSG 393 Query: 456 --RENPNVLFDVPPLEGAVANRGLITQVWENLLSNAVKFSSKSAQPAVRVSMQ------- 506 R+ V+ P L A + I QV NL+ NAV + A+P R+++ Sbjct: 394 SIRDKGAVVEVAPELPPAFGDPTAIEQVLGNLVGNAVNYLDP-ARPG-RITIDHLREEGG 451 Query: 507 --VEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVIRHTGR 564 PE +Y V DNG+G Y HK+F FQRLH G GIGLALV+R+V RH GR Sbjct: 452 AATGPETNVYVVRDNGLGIPPAYMHKMFIAFQRLH-GNAAPGEGIGLALVKRVVERHGGR 510 Query: 565 VWAQSKPGEGASFYFSLPRKGLSP 588 +W +S G+G+SFY +LP + +P Sbjct: 511 IWVESTEGQGSSFYVALPARPPAP 534 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 119 bits (297), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 166/691 (24%), Positives = 279/691 (40%), Gaps = 137/691 (19%) Query: 16 IFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETNSALRETVGNSRGYVL 75 I F +A+L + +A F+Y + Q A + HT V L+ S L++ + RGY+L Sbjct: 21 IGFAVAILAVVLIALFTYEASVSRGQAANAVSHTMKVREQLQSLVSTLKDAETSQRGYLL 80 Query: 76 SGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLVNQRLALSREILALRP 135 +G E Y + + + + LR L++DN Q++RL E + N +L E + LR Sbjct: 81 TGTESYLSPYNQARAALPGEIARLRALLADNPDQLQRLSQIEGITNDKLQELAETIDLRR 140 Query: 136 EQARERVL------EGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADLTIFMVVSGS 189 + L GK D +R EM+G E LLA R D + + + GS Sbjct: 141 KGDAAAALAVVQSDRGKMSMDRVRTLAREMEGEERDLLAARQSDWRDAVSFSTAVAWGGS 200 Query: 190 LLSMALLVLVYSKLRRE----------------MDRRIDAQQRAQAYSDEIEDL---YNN 230 L + L+V R+ + R+ +QR A D Y N Sbjct: 201 GLLLVLIVAAAMTTSRDYRQREKQAWIRAGQMGLAERLQGEQRLDALGDNTLSFLTAYLN 260 Query: 231 APCGY---------------HSVDESD------------------KKIIKINDTELKWLG 257 A G H++D++D + + + D +L Sbjct: 261 AQVGAIYLRSDGGDFERFASHALDDADGPRTLHSGQGLLGQAAKLNRAMHVKDVPEDYL- 319 Query: 258 YTREQVVGRMTHTDLLA-PASAER---------YLRELQPQF--MLKREISGIDLNYRRA 305 T VGR +L+ PASA+ +LR+++P+ +L R I + R + Sbjct: 320 -TISSAVGRRQPRELMVVPASADGMVQAVFELGFLRQVRPEEEELLARLSDQIAIAVRSS 378 Query: 306 -DGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEE----------------EIEA 348 D + L+ T R +L ++ +++ + E+ E+E Sbjct: 379 KDRTRLEELLEET---QRQSEELQAQQEELRVNNEELEEQGQALKASQLRLETQQAELEE 435 Query: 349 LNADLKRQ---------------------ALHLHSVNKELESFSYSVSHDLRAPLRAISG 387 NA L+ Q A L N+ F ++SH+LR PL + Sbjct: 436 TNAQLEEQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLI 495 Query: 388 YAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKLAKSTTGELTL--ERFSMDD 445 A +L ++ + ++ Q I + LIND+L L+K G+L + E F + Sbjct: 496 LAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTK 555 Query: 446 LVRQVIA--GLRRENPNVLFDVPPLEGAVANR-----GLITQVWENLLSNAVKFSSKSAQ 498 L ++ A + + + F V +E V R + Q+ +NLLSNA+KF+ K Sbjct: 556 LADELSASFAITAQQKGLGFKV-EVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKG-- 612 Query: 499 PAVRVSMQVEPE---EYIYGVHDNGVGFDMRYAHKLFGTFQR----LHRQEEYAGTGIGL 551 VS+++ P+ + V D G+G +F F++ HR+ Y GTG+GL Sbjct: 613 ---EVSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRK--YGGTGLGL 667 Query: 552 ALVQRIVIRHTGRVWAQSKPGEGASFYFSLP 582 ++ + + G + S+ GEG+ F SLP Sbjct: 668 SISRDLAHLLGGDIRVTSRLGEGSIFTLSLP 698 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 27/245 (11%) Query: 354 KRQALHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRR 413 +RQA SV + + F ++SH+LR PL AI G+ L D++DA ++ + LQVI R Sbjct: 40 RRQA---DSVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSDA--DRLVKGLQVIER 94 Query: 414 NVRKMDELINDLLKLAKSTTGELTLERFSMD--DLVRQVIAGLRRENPNVLFDVPPLEG- 470 N R +++ DLL +++ G+L LE MD + + IA +R ++ P G Sbjct: 95 NARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEARQIELHPALGQ 154 Query: 471 ---AVANRGLITQVWENLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGVHDNGVGFDMRY 527 + + + QV NLL NA+KF+ + Q V +S++ + V DNG G + Sbjct: 155 GGVILGDPARLQQVVWNLLMNAIKFTPR--QGRVSLSLRQHDDTVALEVSDNGRGIKGEF 212 Query: 528 AHKLFGTFQRLHRQEEY---------AGTGIGLALVQRIVIRHTGRVWAQSK-PGEGASF 577 +F F QE+ +G G+GLA+ + +V H G++ A S PG GA+F Sbjct: 213 LGSVFDRFT----QEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMGAAF 268 Query: 578 YFSLP 582 +LP Sbjct: 269 TVTLP 273 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 22/228 (9%) Query: 369 SFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKL 428 S ++SHDLR PL ++ G A +L + +D+ R + I +KM L+N+LL + Sbjct: 710 SLLSAISHDLRTPLTSLVGSADVLAANAR--LDDDARAMARTISEQSQKMVGLMNNLLDM 767 Query: 429 AKSTTGELTLER--FSMDDLVRQVIAGL------RRENPNVLFDVPPLEGAVANRGLITQ 480 A+ G +TL R ++++L + L R+ + + ++P L + L+ + Sbjct: 768 ARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELPLLR---VDAVLLER 824 Query: 481 VWENLLSNAVKFSSKSAQPAVRVSMQVE-----PEEYIYGVHDNGVGFDMRYAHKLFGTF 535 V NL+ NA+K+S + +S VE P+ + V D G GF F F Sbjct: 825 VLANLVENAIKYSPPGT--PIGISAHVEHGDGAPQVKVC-VMDQGRGFPPTMTQHAFEKF 881 Query: 536 QRLHRQEEYAGTGIGLALVQRIVIRHTGRVW-AQSKPGEGASFYFSLP 582 R + G G+GLA+ + I+ H GR+W A + G+GA+ F+LP Sbjct: 882 TRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLP 929 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,761,110 Number of extensions: 72498 Number of successful extensions: 396 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 364 Number of HSP's successfully gapped: 34 Length of query: 610 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 519 Effective length of database: 1,188,985 Effective search space: 617083215 Effective search space used: 617083215 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)