BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0006.p
         (754 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin...  1494   0.0  

>gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin
           PapC protein [Herbaspirillum seropedicae SmR1]
          Length = 764

 Score = 1494 bits (3868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 749/754 (99%), Positives = 751/754 (99%)

Query: 1   LILLLSCLPGWAAEPGDELLLLEVAINGRDTNLVAQFTRRQRELYASAAELRSLNLRVDG 60
           LILLLSCLPGWAAEPGDELLLLEVAINGRDTNLVAQFTRRQRELYASAAELRSLNLRVDG
Sbjct: 11  LILLLSCLPGWAAEPGDELLLLEVAINGRDTNLVAQFTRRQRELYASAAELRSLNLRVDG 70

Query: 61  GDDELIAIRALASRIQLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQGAVLNY 120
           GDDELIAIRALASRIQLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQGAVLNY
Sbjct: 71  GDDELIAIRALASRIQLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQGAVLNY 130

Query: 121 DLLASSGQGQHALGGLFDARWFSGSAVVSSSALGYTGNSGGVSARLESTLTYSQPASLTR 180
           DLLASSGQGQHALGGLFDARWFSGSAVVSSSALGYTGNSGGVSARLESTLTYSQPASLTR
Sbjct: 131 DLLASSGQGQHALGGLFDARWFSGSAVVSSSALGYTGNSGGVSARLESTLTYSQPASLTR 190

Query: 181 YRLGDVINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVR 240
           YRLGDVINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVR
Sbjct: 191 YRLGDVINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVR 250

Query: 241 QLSQPVPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAE 300
           QLSQPVPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAE
Sbjct: 251 QLSQPVPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAE 310

Query: 301 GGWVRRHYGLRSNDYGQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVLNLGNRAV 360
           GGWVRRHYGLRSNDYGQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAV NLGNRAV
Sbjct: 311 GGWVRRHYGLRSNDYGQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVFNLGNRAV 370

Query: 361 LASALSASSAASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQGAPVSRSATVA 420
           LASALSAS+AASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQGAPVSRSATVA
Sbjct: 371 LASALSASNAASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQGAPVSRSATVA 430

Query: 421 TLGMNLGSAGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTASMYLTGYRD 480
           TLGMNLGSAGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTASMYLTGYRD
Sbjct: 431 TLGMNLGSAGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTASMYLTGYRD 490

Query: 481 FRNSGYGASVGIIIPLGGRDVVGASMNNNNGQRTATLQASRSTVAIGDLGWQLQDTEGSY 540
           FRNSGYGASVGIIIPLGGRDVVGASMNNNNGQRTATLQASRSTVAIGDLGWQLQDTEGSY
Sbjct: 491 FRNSGYGASVGIIIPLGGRDVVGASMNNNNGQRTATLQASRSTVAIGDLGWQLQDTEGSY 550

Query: 541 QQRLAQLNYKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNAS 600
           QQRLAQLNYKSRVGSFSAGVSQGG ISSQRLGARGALAFMDGGVFASDWIDDSFAVVNAS
Sbjct: 551 QQRLAQLNYKSRVGSFSAGVSQGGTISSQRLGARGALAFMDGGVFASDWIDDSFAVVNAS 610

Query: 601 GVKNVGIYTENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRD 660
           GVKNVGIY ENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRD
Sbjct: 611 GVKNVGIYNENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRD 670

Query: 661 RSGVIVHFNARRASDVTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYLQELAPLN 720
           RSGVIVHFNARRASDVTLTLKDAAGNYLPIGASIRVRETGL+APVGYDGVSYLQELAPLN
Sbjct: 671 RSGVIVHFNARRASDVTLTLKDAAGNYLPIGASIRVRETGLEAPVGYDGVSYLQELAPLN 730

Query: 721 TLDVLLPSGDQCHATLVPPVRSEGGMANEVVVCR 754
           TLDVLLPSGDQCHATLVPPVRSEGGMANEVVVCR
Sbjct: 731 TLDVLLPSGDQCHATLVPPVRSEGGMANEVVVCR 764


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,281,292
Number of extensions: 98711
Number of successful extensions: 323
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 662
Effective length of database: 1,184,250
Effective search space: 783973500
Effective search space used: 783973500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)